Hb_001449_050

Information

Type -
Description -
Location Contig1449: 94791-96032
Sequence    

Annotation

kegg
ID rcu:RCOM_0115930
description hypothetical protein
nr
ID XP_002534054.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9SD53
description UPF0481 protein At3g47200 OS=Arabidopsis thaliana GN=At3g47200 PE=2 SV=1
trembl
ID B9T735
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0115930 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001449_050 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000343_180 0.2278917947 - - NDWp3 [Podospora anserina]
3 Hb_012052_070 0.2313725272 - - PREDICTED: uncharacterized protein LOC105635597 [Jatropha curcas]
4 Hb_089160_010 0.2552964672 - - PREDICTED: uncharacterized protein LOC105793196 [Gossypium raimondii]
5 Hb_005147_010 0.2574290473 - - PREDICTED: uncharacterized protein LOC105629670 [Jatropha curcas]
6 Hb_140049_010 0.2580927485 transcription factor TF Family: GNAT PREDICTED: uncharacterized protein LOC105632009 [Jatropha curcas]
7 Hb_023344_080 0.2585815414 - - PREDICTED: uncharacterized protein LOC105644472 isoform X1 [Jatropha curcas]
8 Hb_000732_250 0.2626112182 - - PREDICTED: external alternative NAD(P)H-ubiquinone oxidoreductase B2, mitochondrial-like [Populus euphratica]
9 Hb_000802_110 0.2633999388 - - hypothetical protein POPTR_0004s20690g [Populus trichocarpa]
10 Hb_002110_240 0.2659510563 - - clathrin assembly protein, putative [Ricinus communis]
11 Hb_001863_440 0.2661031578 - - Nodulin-26, putative [Ricinus communis]
12 Hb_007558_020 0.2714908205 - - hypothetical protein JCGZ_17631 [Jatropha curcas]
13 Hb_006907_080 0.2735692703 - - PREDICTED: RPM1-interacting protein 4-like [Jatropha curcas]
14 Hb_003777_050 0.2740823368 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105629120 [Jatropha curcas]
15 Hb_002341_020 0.2760602375 - - PREDICTED: pyruvate decarboxylase 2 [Populus euphratica]
16 Hb_005686_050 0.2788156579 - - PREDICTED: probable tyrosine-protein phosphatase At1g05000 [Jatropha curcas]
17 Hb_009974_020 0.2823405706 - - PREDICTED: uncharacterized protein LOC104427753 [Eucalyptus grandis]
18 Hb_010050_050 0.2845535595 - - PREDICTED: piezo-type mechanosensitive ion channel homolog isoform X2 [Jatropha curcas]
19 Hb_000009_450 0.2855286301 - - PREDICTED: pentatricopeptide repeat-containing protein At2g22410, mitochondrial-like [Jatropha curcas]
20 Hb_001437_130 0.2855821793 - - hypothetical protein F383_15788 [Gossypium arboreum]

Gene co-expression network

sample Hb_001449_050 Hb_001449_050 Hb_000343_180 Hb_000343_180 Hb_001449_050--Hb_000343_180 Hb_012052_070 Hb_012052_070 Hb_001449_050--Hb_012052_070 Hb_089160_010 Hb_089160_010 Hb_001449_050--Hb_089160_010 Hb_005147_010 Hb_005147_010 Hb_001449_050--Hb_005147_010 Hb_140049_010 Hb_140049_010 Hb_001449_050--Hb_140049_010 Hb_023344_080 Hb_023344_080 Hb_001449_050--Hb_023344_080 Hb_000802_110 Hb_000802_110 Hb_000343_180--Hb_000802_110 Hb_002110_240 Hb_002110_240 Hb_000343_180--Hb_002110_240 Hb_008173_030 Hb_008173_030 Hb_000343_180--Hb_008173_030 Hb_000732_250 Hb_000732_250 Hb_000343_180--Hb_000732_250 Hb_000975_360 Hb_000975_360 Hb_000343_180--Hb_000975_360 Hb_007558_020 Hb_007558_020 Hb_000343_180--Hb_007558_020 Hb_000099_070 Hb_000099_070 Hb_012052_070--Hb_000099_070 Hb_002267_080 Hb_002267_080 Hb_012052_070--Hb_002267_080 Hb_000948_080 Hb_000948_080 Hb_012052_070--Hb_000948_080 Hb_005686_050 Hb_005686_050 Hb_012052_070--Hb_005686_050 Hb_001488_370 Hb_001488_370 Hb_012052_070--Hb_001488_370 Hb_001863_440 Hb_001863_440 Hb_089160_010--Hb_001863_440 Hb_002007_190 Hb_002007_190 Hb_089160_010--Hb_002007_190 Hb_009974_030 Hb_009974_030 Hb_089160_010--Hb_009974_030 Hb_161785_010 Hb_161785_010 Hb_089160_010--Hb_161785_010 Hb_000130_230 Hb_000130_230 Hb_089160_010--Hb_000130_230 Hb_183612_060 Hb_183612_060 Hb_005147_010--Hb_183612_060 Hb_061195_020 Hb_061195_020 Hb_005147_010--Hb_061195_020 Hb_139138_010 Hb_139138_010 Hb_005147_010--Hb_139138_010 Hb_011909_140 Hb_011909_140 Hb_005147_010--Hb_011909_140 Hb_001199_040 Hb_001199_040 Hb_005147_010--Hb_001199_040 Hb_005015_030 Hb_005015_030 Hb_005147_010--Hb_005015_030 Hb_006907_080 Hb_006907_080 Hb_140049_010--Hb_006907_080 Hb_010506_010 Hb_010506_010 Hb_140049_010--Hb_010506_010 Hb_000418_080 Hb_000418_080 Hb_140049_010--Hb_000418_080 Hb_000120_150 Hb_000120_150 Hb_140049_010--Hb_000120_150 Hb_140049_010--Hb_007558_020 Hb_004787_040 Hb_004787_040 Hb_140049_010--Hb_004787_040 Hb_000788_060 Hb_000788_060 Hb_023344_080--Hb_000788_060 Hb_001856_200 Hb_001856_200 Hb_023344_080--Hb_001856_200 Hb_006909_060 Hb_006909_060 Hb_023344_080--Hb_006909_060 Hb_000987_060 Hb_000987_060 Hb_023344_080--Hb_000987_060 Hb_001619_040 Hb_001619_040 Hb_023344_080--Hb_001619_040 Hb_000239_020 Hb_000239_020 Hb_023344_080--Hb_000239_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0707936 0.0134374 0.0139945 0 0.0149838
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0389397 0.0612627 0.0570809 0.0122629 0

CAGE analysis