Hb_002267_080

Information

Type -
Description -
Location Contig2267: 79126-87037
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa007984mg
description hypothetical protein
nr
ID XP_012073472.1
description PREDICTED: uncharacterized protein LOC105635094 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID M5WT03
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa007984mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002267_080 0.0 - - PREDICTED: uncharacterized protein LOC105635094 [Jatropha curcas]
2 Hb_000694_060 0.1931127421 - - Rotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial precursor, putative [Ricinus communis]
3 Hb_002374_380 0.2037244546 - - Acyl-CoA N-acyltransferases (NAT) superfamily protein isoform 1 [Theobroma cacao]
4 Hb_007017_010 0.2094197118 transcription factor TF Family: MYB-related PREDICTED: transcription factor MYB1R1 [Jatropha curcas]
5 Hb_000304_030 0.209657615 - - PREDICTED: seed maturation protein PM36 [Jatropha curcas]
6 Hb_000948_080 0.2160249923 - - PREDICTED: uncharacterized protein LOC105634692 [Jatropha curcas]
7 Hb_004543_040 0.2262965734 - - ABC transporter family protein [Hevea brasiliensis]
8 Hb_001504_120 0.2305505223 - - -
9 Hb_012052_070 0.2320504754 - - PREDICTED: uncharacterized protein LOC105635597 [Jatropha curcas]
10 Hb_000099_070 0.2332534175 - - PREDICTED: uncharacterized protein At5g41620 [Jatropha curcas]
11 Hb_110560_010 0.2354717012 - - ATP binding protein, putative [Ricinus communis]
12 Hb_000329_250 0.237002355 - - PREDICTED: vesicle-associated protein 1-3 isoform X1 [Fragaria vesca subsp. vesca]
13 Hb_010883_120 0.2399097766 - - -
14 Hb_000868_100 0.2411088909 - - PREDICTED: probable E3 ubiquitin-protein ligase RNF144A [Jatropha curcas]
15 Hb_000009_180 0.2434472398 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase RecName: Full=Geranylgeranyl pyrophosphate synthase, chloroplastic; Short=GGPP synthase; Short=GGPS; AltName: Full=(2E,6E)-farnesyl diphosphate synthase; AltName: Full=Dimethylallyltranstransferase; AltName: Full=Farnesyl diphosphate synthase; AltName: Full=Farnesyltranstransferase; AltName: Full=Geranyltranstransferase; Flags: Precursor [Hevea brasiliensis]
16 Hb_005015_030 0.245952453 - - PREDICTED: uncharacterized protein LOC105636546 [Jatropha curcas]
17 Hb_011795_020 0.2465306984 - - -
18 Hb_105602_010 0.2473592693 - - Ketose-bisphosphate aldolase class-II family protein isoform 5 [Theobroma cacao]
19 Hb_001102_240 0.247620914 - - PREDICTED: NADH kinase isoform X1 [Jatropha curcas]
20 Hb_002027_140 0.2480805065 - - PREDICTED: probable indole-3-acetic acid-amido synthetase GH3.6 [Jatropha curcas]

Gene co-expression network

sample Hb_002267_080 Hb_002267_080 Hb_000694_060 Hb_000694_060 Hb_002267_080--Hb_000694_060 Hb_002374_380 Hb_002374_380 Hb_002267_080--Hb_002374_380 Hb_007017_010 Hb_007017_010 Hb_002267_080--Hb_007017_010 Hb_000304_030 Hb_000304_030 Hb_002267_080--Hb_000304_030 Hb_000948_080 Hb_000948_080 Hb_002267_080--Hb_000948_080 Hb_004543_040 Hb_004543_040 Hb_002267_080--Hb_004543_040 Hb_000694_060--Hb_002374_380 Hb_000868_100 Hb_000868_100 Hb_000694_060--Hb_000868_100 Hb_000694_060--Hb_007017_010 Hb_008948_120 Hb_008948_120 Hb_000694_060--Hb_008948_120 Hb_000694_060--Hb_000948_080 Hb_002236_050 Hb_002236_050 Hb_000694_060--Hb_002236_050 Hb_001433_110 Hb_001433_110 Hb_002374_380--Hb_001433_110 Hb_004453_080 Hb_004453_080 Hb_002374_380--Hb_004453_080 Hb_105602_010 Hb_105602_010 Hb_002374_380--Hb_105602_010 Hb_003442_070 Hb_003442_070 Hb_002374_380--Hb_003442_070 Hb_007850_080 Hb_007850_080 Hb_002374_380--Hb_007850_080 Hb_002235_080 Hb_002235_080 Hb_007017_010--Hb_002235_080 Hb_003327_050 Hb_003327_050 Hb_007017_010--Hb_003327_050 Hb_000028_100 Hb_000028_100 Hb_007017_010--Hb_000028_100 Hb_000487_230 Hb_000487_230 Hb_007017_010--Hb_000487_230 Hb_000099_070 Hb_000099_070 Hb_007017_010--Hb_000099_070 Hb_183612_060 Hb_183612_060 Hb_007017_010--Hb_183612_060 Hb_000009_050 Hb_000009_050 Hb_000304_030--Hb_000009_050 Hb_141990_040 Hb_141990_040 Hb_000304_030--Hb_141990_040 Hb_000009_180 Hb_000009_180 Hb_000304_030--Hb_000009_180 Hb_000225_060 Hb_000225_060 Hb_000304_030--Hb_000225_060 Hb_000465_300 Hb_000465_300 Hb_000304_030--Hb_000465_300 Hb_001341_100 Hb_001341_100 Hb_000304_030--Hb_001341_100 Hb_021888_050 Hb_021888_050 Hb_000948_080--Hb_021888_050 Hb_000975_360 Hb_000975_360 Hb_000948_080--Hb_000975_360 Hb_000402_210 Hb_000402_210 Hb_000948_080--Hb_000402_210 Hb_110560_010 Hb_110560_010 Hb_000948_080--Hb_110560_010 Hb_000948_080--Hb_002374_380 Hb_028487_020 Hb_028487_020 Hb_000948_080--Hb_028487_020 Hb_000997_120 Hb_000997_120 Hb_004543_040--Hb_000997_120 Hb_086639_090 Hb_086639_090 Hb_004543_040--Hb_086639_090 Hb_091433_020 Hb_091433_020 Hb_004543_040--Hb_091433_020 Hb_001369_170 Hb_001369_170 Hb_004543_040--Hb_001369_170 Hb_000496_120 Hb_000496_120 Hb_004543_040--Hb_000496_120 Hb_006478_150 Hb_006478_150 Hb_004543_040--Hb_006478_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.08546 0.395005 0.356422 0.324484 0.455377
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.637144 2.33881 0.496238 1.29923 0.137991

CAGE analysis