Hb_005686_050

Information

Type -
Description -
Location Contig5686: 62439-64745
Sequence    

Annotation

kegg
ID rcu:RCOM_1078560
description Tyrosine-protein phosphatase SIW14, putative
nr
ID XP_012085756.1
description PREDICTED: probable tyrosine-protein phosphatase At1g05000 [Jatropha curcas]
swissprot
ID Q9ZVN4
description Probable tyrosine-protein phosphatase At1g05000 OS=Arabidopsis thaliana GN=At1g05000 PE=1 SV=1
trembl
ID A0A067K3N3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18023 PE=4 SV=1
Gene Ontology
ID GO:0004725
description probable tyrosine-protein phosphatase at1g05000

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49201: 62566-64461 , PASA_asmbl_49202: 63162-63309
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005686_050 0.0 - - PREDICTED: probable tyrosine-protein phosphatase At1g05000 [Jatropha curcas]
2 Hb_000009_450 0.1171691035 - - PREDICTED: pentatricopeptide repeat-containing protein At2g22410, mitochondrial-like [Jatropha curcas]
3 Hb_008566_050 0.1399615243 - - phosphoglycerate mutase, putative [Ricinus communis]
4 Hb_110560_010 0.1411715217 - - ATP binding protein, putative [Ricinus communis]
5 Hb_012760_070 0.1454050167 - - protein phosphatase 2c, putative [Ricinus communis]
6 Hb_005545_100 0.1465277804 - - PREDICTED: uncharacterized protein LOC105645673 isoform X1 [Jatropha curcas]
7 Hb_004375_150 0.1468338384 - - PREDICTED: uncharacterized protein LOC105642574 [Jatropha curcas]
8 Hb_000392_380 0.1506829911 - - ubiquitin-conjugating enzyme [Medicago truncatula]
9 Hb_000649_130 0.1541375604 - - Polcalcin Jun o, putative [Ricinus communis]
10 Hb_001437_130 0.1551036656 - - hypothetical protein F383_15788 [Gossypium arboreum]
11 Hb_000117_090 0.1606396108 - - PREDICTED: uncharacterized protein LOC105633456 [Jatropha curcas]
12 Hb_001437_150 0.1664527253 - - PREDICTED: SNF1-related protein kinase regulatory subunit beta-3-like [Jatropha curcas]
13 Hb_011236_010 0.1673304586 - - hypothetical protein JCGZ_17006 [Jatropha curcas]
14 Hb_008772_010 0.1690969402 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000210_010 0.169142118 - - PREDICTED: probable CCR4-associated factor 1 homolog 11 [Jatropha curcas]
16 Hb_009486_020 0.1693022563 - - nucleoside diphosphate kinase 1 [Hevea brasiliensis]
17 Hb_004705_080 0.1698868958 transcription factor TF Family: ARF transcription factor, putative [Ricinus communis]
18 Hb_078806_010 0.1708172856 - - hypothetical protein CISIN_1g031839mg [Citrus sinensis]
19 Hb_000856_380 0.1711299268 - - ubiquitin-conjugating enzyme [Medicago truncatula]
20 Hb_000178_130 0.1712852514 - - soluble inorganic pyrophosphatase [Hevea brasiliensis]

Gene co-expression network

sample Hb_005686_050 Hb_005686_050 Hb_000009_450 Hb_000009_450 Hb_005686_050--Hb_000009_450 Hb_008566_050 Hb_008566_050 Hb_005686_050--Hb_008566_050 Hb_110560_010 Hb_110560_010 Hb_005686_050--Hb_110560_010 Hb_012760_070 Hb_012760_070 Hb_005686_050--Hb_012760_070 Hb_005545_100 Hb_005545_100 Hb_005686_050--Hb_005545_100 Hb_004375_150 Hb_004375_150 Hb_005686_050--Hb_004375_150 Hb_000009_450--Hb_004375_150 Hb_000117_090 Hb_000117_090 Hb_000009_450--Hb_000117_090 Hb_000033_020 Hb_000033_020 Hb_000009_450--Hb_000033_020 Hb_141990_040 Hb_141990_040 Hb_000009_450--Hb_141990_040 Hb_000009_450--Hb_012760_070 Hb_000009_450--Hb_008566_050 Hb_000039_160 Hb_000039_160 Hb_008566_050--Hb_000039_160 Hb_008566_050--Hb_000117_090 Hb_001437_150 Hb_001437_150 Hb_008566_050--Hb_001437_150 Hb_000155_200 Hb_000155_200 Hb_008566_050--Hb_000155_200 Hb_004705_080 Hb_004705_080 Hb_008566_050--Hb_004705_080 Hb_001123_130 Hb_001123_130 Hb_008566_050--Hb_001123_130 Hb_000225_060 Hb_000225_060 Hb_110560_010--Hb_000225_060 Hb_110560_010--Hb_008566_050 Hb_110560_010--Hb_004705_080 Hb_000099_150 Hb_000099_150 Hb_110560_010--Hb_000099_150 Hb_000045_300 Hb_000045_300 Hb_110560_010--Hb_000045_300 Hb_091433_020 Hb_091433_020 Hb_110560_010--Hb_091433_020 Hb_010812_120 Hb_010812_120 Hb_012760_070--Hb_010812_120 Hb_000016_160 Hb_000016_160 Hb_012760_070--Hb_000016_160 Hb_008772_010 Hb_008772_010 Hb_012760_070--Hb_008772_010 Hb_028515_010 Hb_028515_010 Hb_012760_070--Hb_028515_010 Hb_000748_130 Hb_000748_130 Hb_012760_070--Hb_000748_130 Hb_000175_060 Hb_000175_060 Hb_012760_070--Hb_000175_060 Hb_001504_330 Hb_001504_330 Hb_005545_100--Hb_001504_330 Hb_002284_200 Hb_002284_200 Hb_005545_100--Hb_002284_200 Hb_005545_100--Hb_008566_050 Hb_136509_010 Hb_136509_010 Hb_005545_100--Hb_136509_010 Hb_022250_060 Hb_022250_060 Hb_005545_100--Hb_022250_060 Hb_002217_020 Hb_002217_020 Hb_005545_100--Hb_002217_020 Hb_168319_030 Hb_168319_030 Hb_004375_150--Hb_168319_030 Hb_004607_030 Hb_004607_030 Hb_004375_150--Hb_004607_030 Hb_000366_090 Hb_000366_090 Hb_004375_150--Hb_000366_090 Hb_025557_030 Hb_025557_030 Hb_004375_150--Hb_025557_030 Hb_004375_150--Hb_000033_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.13592 23.6641 18.8416 19.5504 6.44113 14.5298
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.1533 47.4595 38.7407 6.50962 4.09787

CAGE analysis