Hb_008864_070

Information

Type -
Description -
Location Contig8864: 65992-66360
Sequence    

Annotation

kegg
ID vvi:104878189
description uncharacterized LOC104878189
nr
ID XP_012491711.1
description PREDICTED: uncharacterized protein LOC105803851 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A0D2SDR7
description Gossypium raimondii chromosome 7, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_007G207600 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008864_070 0.0 - - PREDICTED: uncharacterized protein LOC105803851 [Gossypium raimondii]
2 Hb_006096_010 0.2260564983 - - conserved hypothetical protein [Ricinus communis]
3 Hb_005701_030 0.253904176 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001863_440 0.2579714468 - - Nodulin-26, putative [Ricinus communis]
5 Hb_001902_150 0.2656186772 - - PREDICTED: cytokinin hydroxylase-like [Jatropha curcas]
6 Hb_000186_210 0.2790827693 transcription factor TF Family: HB homeobox protein knotted-1, putative [Ricinus communis]
7 Hb_000167_020 0.2863627372 - - -
8 Hb_004296_020 0.2943371349 - - unnamed protein product [Coffea canephora]
9 Hb_006907_120 0.3020227883 - - PREDICTED: uncharacterized protein LOC103327233 [Prunus mume]
10 Hb_007218_140 0.3107590541 - - hypothetical protein JCGZ_24847 [Jatropha curcas]
11 Hb_020400_040 0.3126228159 - - PREDICTED: E3 ubiquitin-protein ligase RNF181-like [Jatropha curcas]
12 Hb_000072_330 0.3126900168 - - conserved hypothetical protein [Ricinus communis]
13 Hb_002110_240 0.3135638937 - - clathrin assembly protein, putative [Ricinus communis]
14 Hb_009233_030 0.3153598072 - - protein binding protein, putative [Ricinus communis]
15 Hb_000638_210 0.3157918596 - - Pectin lyase-like superfamily protein isoform 1 [Theobroma cacao]
16 Hb_001059_020 0.319167537 - - PREDICTED: FBD-associated F-box protein At4g10400-like [Malus domestica]
17 Hb_000343_180 0.3232318675 - - NDWp3 [Podospora anserina]
18 Hb_001364_030 0.3264935597 - - hypothetical protein JCGZ_19531 [Jatropha curcas]
19 Hb_002272_010 0.3312034754 - - conserved hypothetical protein [Ricinus communis]
20 Hb_022137_040 0.331553478 - - PREDICTED: MATE efflux family protein LAL5-like [Jatropha curcas]

Gene co-expression network

sample Hb_008864_070 Hb_008864_070 Hb_006096_010 Hb_006096_010 Hb_008864_070--Hb_006096_010 Hb_005701_030 Hb_005701_030 Hb_008864_070--Hb_005701_030 Hb_001863_440 Hb_001863_440 Hb_008864_070--Hb_001863_440 Hb_001902_150 Hb_001902_150 Hb_008864_070--Hb_001902_150 Hb_000186_210 Hb_000186_210 Hb_008864_070--Hb_000186_210 Hb_000167_020 Hb_000167_020 Hb_008864_070--Hb_000167_020 Hb_020400_040 Hb_020400_040 Hb_006096_010--Hb_020400_040 Hb_002272_010 Hb_002272_010 Hb_006096_010--Hb_002272_010 Hb_002110_240 Hb_002110_240 Hb_006096_010--Hb_002110_240 Hb_002205_010 Hb_002205_010 Hb_006096_010--Hb_002205_010 Hb_009233_030 Hb_009233_030 Hb_006096_010--Hb_009233_030 Hb_033772_050 Hb_033772_050 Hb_005701_030--Hb_033772_050 Hb_001364_030 Hb_001364_030 Hb_005701_030--Hb_001364_030 Hb_000363_140 Hb_000363_140 Hb_005701_030--Hb_000363_140 Hb_004296_020 Hb_004296_020 Hb_005701_030--Hb_004296_020 Hb_000692_020 Hb_000692_020 Hb_005701_030--Hb_000692_020 Hb_004129_150 Hb_004129_150 Hb_005701_030--Hb_004129_150 Hb_089160_010 Hb_089160_010 Hb_001863_440--Hb_089160_010 Hb_001894_090 Hb_001894_090 Hb_001863_440--Hb_001894_090 Hb_001449_050 Hb_001449_050 Hb_001863_440--Hb_001449_050 Hb_006502_050 Hb_006502_050 Hb_001863_440--Hb_006502_050 Hb_161785_010 Hb_161785_010 Hb_001863_440--Hb_161785_010 Hb_007218_140 Hb_007218_140 Hb_001902_150--Hb_007218_140 Hb_002063_030 Hb_002063_030 Hb_001902_150--Hb_002063_030 Hb_000072_330 Hb_000072_330 Hb_001902_150--Hb_000072_330 Hb_005048_050 Hb_005048_050 Hb_001902_150--Hb_005048_050 Hb_000275_070 Hb_000275_070 Hb_001902_150--Hb_000275_070 Hb_001189_060 Hb_001189_060 Hb_001902_150--Hb_001189_060 Hb_000186_210--Hb_001189_060 Hb_006907_120 Hb_006907_120 Hb_000186_210--Hb_006907_120 Hb_002316_040 Hb_002316_040 Hb_000186_210--Hb_002316_040 Hb_003018_070 Hb_003018_070 Hb_000186_210--Hb_003018_070 Hb_000186_210--Hb_006096_010 Hb_011360_030 Hb_011360_030 Hb_000167_020--Hb_011360_030 Hb_000167_020--Hb_007218_140 Hb_015175_010 Hb_015175_010 Hb_000167_020--Hb_015175_010 Hb_000167_020--Hb_006096_010 Hb_000167_020--Hb_002063_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.04529 9.47273 0.156273 0 0.199438 0.0902543
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.74233 4.96154 1.43115 0.401023 0

CAGE analysis