Hb_011360_030

Information

Type -
Description -
Location Contig11360: 3710-4372
Sequence    

Annotation

kegg
ID rcu:RCOM_0332130
description zinc finger protein, putative
nr
ID XP_002534571.1
description zinc finger protein, putative [Ricinus communis]
swissprot
ID P0CH30
description E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum GN=RING1 PE=1 SV=1
trembl
ID B9T8K2
description Zinc finger protein, putative OS=Ricinus communis GN=RCOM_0332130 PE=4 SV=1
Gene Ontology
ID GO:0046872
description zinc finger

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011360_030 0.0 - - zinc finger protein, putative [Ricinus communis]
2 Hb_000167_020 0.2438424588 - - -
3 Hb_088084_010 0.2671750398 - - PREDICTED: putative calcium-transporting ATPase 13, plasma membrane-type [Jatropha curcas]
4 Hb_001277_140 0.2879286217 - - PREDICTED: plasma membrane calcium-transporting ATPase 2-like [Takifugu rubripes]
5 Hb_002641_100 0.2880266914 - - PREDICTED: uncharacterized protein LOC105115446 [Populus euphratica]
6 Hb_022137_040 0.3008719694 - - PREDICTED: MATE efflux family protein LAL5-like [Jatropha curcas]
7 Hb_131956_010 0.3121201863 - - hypothetical protein JCGZ_19531 [Jatropha curcas]
8 Hb_008695_030 0.3149840903 - - hypothetical protein JCGZ_12043 [Jatropha curcas]
9 Hb_023024_010 0.3166107248 - - PREDICTED: uncharacterized protein LOC105767094 [Gossypium raimondii]
10 Hb_082219_010 0.3210006227 - - Os03g0264300, partial [Oryza sativa Japonica Group]
11 Hb_143863_010 0.321918134 - - PREDICTED: uncharacterized protein LOC105113187 isoform X2 [Populus euphratica]
12 Hb_010531_060 0.3224223539 - - hypothetical protein B456_010G209400, partial [Gossypium raimondii]
13 Hb_000072_330 0.3325957601 - - conserved hypothetical protein [Ricinus communis]
14 Hb_006816_510 0.3327545799 - - Pectinesterase inhibitor, putative [Ricinus communis]
15 Hb_007218_140 0.3339854202 - - hypothetical protein JCGZ_24847 [Jatropha curcas]
16 Hb_005269_010 0.3363198093 - - -
17 Hb_009302_010 0.3404180737 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
18 Hb_002217_270 0.3446050438 - - PREDICTED: desiccation-related protein PCC13-62-like [Jatropha curcas]
19 Hb_136886_010 0.3454525496 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
20 Hb_002269_010 0.3474182455 - - PREDICTED: WAT1-related protein At4g15540-like [Jatropha curcas]

Gene co-expression network

sample Hb_011360_030 Hb_011360_030 Hb_000167_020 Hb_000167_020 Hb_011360_030--Hb_000167_020 Hb_088084_010 Hb_088084_010 Hb_011360_030--Hb_088084_010 Hb_001277_140 Hb_001277_140 Hb_011360_030--Hb_001277_140 Hb_002641_100 Hb_002641_100 Hb_011360_030--Hb_002641_100 Hb_022137_040 Hb_022137_040 Hb_011360_030--Hb_022137_040 Hb_131956_010 Hb_131956_010 Hb_011360_030--Hb_131956_010 Hb_007218_140 Hb_007218_140 Hb_000167_020--Hb_007218_140 Hb_008864_070 Hb_008864_070 Hb_000167_020--Hb_008864_070 Hb_015175_010 Hb_015175_010 Hb_000167_020--Hb_015175_010 Hb_006096_010 Hb_006096_010 Hb_000167_020--Hb_006096_010 Hb_002063_030 Hb_002063_030 Hb_000167_020--Hb_002063_030 Hb_088084_010--Hb_001277_140 Hb_002217_270 Hb_002217_270 Hb_088084_010--Hb_002217_270 Hb_136886_010 Hb_136886_010 Hb_088084_010--Hb_136886_010 Hb_000960_010 Hb_000960_010 Hb_088084_010--Hb_000960_010 Hb_143863_010 Hb_143863_010 Hb_088084_010--Hb_143863_010 Hb_088084_010--Hb_131956_010 Hb_001529_030 Hb_001529_030 Hb_001277_140--Hb_001529_030 Hb_002760_060 Hb_002760_060 Hb_001277_140--Hb_002760_060 Hb_001922_160 Hb_001922_160 Hb_001277_140--Hb_001922_160 Hb_001277_140--Hb_131956_010 Hb_003053_060 Hb_003053_060 Hb_001277_140--Hb_003053_060 Hb_172864_010 Hb_172864_010 Hb_002641_100--Hb_172864_010 Hb_004352_020 Hb_004352_020 Hb_002641_100--Hb_004352_020 Hb_002641_100--Hb_001277_140 Hb_000380_070 Hb_000380_070 Hb_002641_100--Hb_000380_070 Hb_082219_010 Hb_082219_010 Hb_002641_100--Hb_082219_010 Hb_002641_100--Hb_001922_160 Hb_022137_040--Hb_131956_010 Hb_022137_040--Hb_001277_140 Hb_000638_210 Hb_000638_210 Hb_022137_040--Hb_000638_210 Hb_000567_080 Hb_000567_080 Hb_022137_040--Hb_000567_080 Hb_009838_060 Hb_009838_060 Hb_022137_040--Hb_009838_060 Hb_012760_010 Hb_012760_010 Hb_022137_040--Hb_012760_010 Hb_002235_240 Hb_002235_240 Hb_131956_010--Hb_002235_240 Hb_129204_060 Hb_129204_060 Hb_131956_010--Hb_129204_060 Hb_131956_010--Hb_009838_060 Hb_004800_190 Hb_004800_190 Hb_131956_010--Hb_004800_190 Hb_004724_130 Hb_004724_130 Hb_131956_010--Hb_004724_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.198708 0.773154 0.0303863 0 0.0354397 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0873288 0.0686461 0 0 0

CAGE analysis