Hb_002316_040

Information

Type -
Description -
Location Contig2316: 38038-41372
Sequence    

Annotation

kegg
ID rcu:RCOM_1511570
description trehalose-6-phosphate synthase, putative (EC:2.4.1.15 3.1.3.12)
nr
ID XP_002511428.1
description trehalose-6-phosphate synthase, putative [Ricinus communis]
swissprot
ID Q9LRA7
description Probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 9 OS=Arabidopsis thaliana GN=TPS9 PE=2 SV=1
trembl
ID B9RB53
description Trehalose-6-phosphate synthase, putative OS=Ricinus communis GN=RCOM_1511570 PE=4 SV=1
Gene Ontology
ID GO:0003824
description probable -trehalose-phosphate synthase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24360: 34831-38176 , PASA_asmbl_24361: 38214-41439
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002316_040 0.0 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
2 Hb_001860_010 0.2399761862 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
3 Hb_001059_020 0.2596285782 - - PREDICTED: FBD-associated F-box protein At4g10400-like [Malus domestica]
4 Hb_000186_210 0.2631952022 transcription factor TF Family: HB homeobox protein knotted-1, putative [Ricinus communis]
5 Hb_013818_040 0.2722973524 - - PREDICTED: pleckstrin homology domain-containing family A member 8 [Jatropha curcas]
6 Hb_000272_120 0.2807743398 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator ARR18 isoform X2 [Jatropha curcas]
7 Hb_004732_010 0.2987688695 - - -
8 Hb_000277_060 0.2992966353 - - hypothetical protein POPTR_0004s20690g [Populus trichocarpa]
9 Hb_001894_090 0.2993937368 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH90 [Jatropha curcas]
10 Hb_000345_200 0.3008061916 - - PREDICTED: uncharacterized protein LOC105647522 [Jatropha curcas]
11 Hb_005701_080 0.3016323415 - - ATP binding protein, putative [Ricinus communis]
12 Hb_000019_140 0.3020276571 - - Light-regulated protein precursor, putative [Ricinus communis]
13 Hb_010288_040 0.3041551934 - - PREDICTED: transmembrane protein 205-like [Eucalyptus grandis]
14 Hb_001205_030 0.3063563339 transcription factor TF Family: zf-HD hypothetical protein POPTR_0007s12970g [Populus trichocarpa]
15 Hb_000883_040 0.3115215543 - - -
16 Hb_081745_010 0.3174080171 - - hypothetical protein CISIN_1g030953mg [Citrus sinensis]
17 Hb_007218_140 0.3213510945 - - hypothetical protein JCGZ_24847 [Jatropha curcas]
18 Hb_000072_330 0.3220568408 - - conserved hypothetical protein [Ricinus communis]
19 Hb_007105_010 0.3242150276 - - PREDICTED: uncharacterized protein LOC103455579 [Malus domestica]
20 Hb_003849_260 0.3249530347 - - PREDICTED: uncharacterized protein LOC105644666 [Jatropha curcas]

Gene co-expression network

sample Hb_002316_040 Hb_002316_040 Hb_001860_010 Hb_001860_010 Hb_002316_040--Hb_001860_010 Hb_001059_020 Hb_001059_020 Hb_002316_040--Hb_001059_020 Hb_000186_210 Hb_000186_210 Hb_002316_040--Hb_000186_210 Hb_013818_040 Hb_013818_040 Hb_002316_040--Hb_013818_040 Hb_000272_120 Hb_000272_120 Hb_002316_040--Hb_000272_120 Hb_004732_010 Hb_004732_010 Hb_002316_040--Hb_004732_010 Hb_018790_080 Hb_018790_080 Hb_001860_010--Hb_018790_080 Hb_000627_090 Hb_000627_090 Hb_001860_010--Hb_000627_090 Hb_000567_040 Hb_000567_040 Hb_001860_010--Hb_000567_040 Hb_005701_080 Hb_005701_080 Hb_001860_010--Hb_005701_080 Hb_000997_110 Hb_000997_110 Hb_001860_010--Hb_000997_110 Hb_001059_020--Hb_000186_210 Hb_000014_140 Hb_000014_140 Hb_001059_020--Hb_000014_140 Hb_008453_070 Hb_008453_070 Hb_001059_020--Hb_008453_070 Hb_081745_010 Hb_081745_010 Hb_001059_020--Hb_081745_010 Hb_000277_060 Hb_000277_060 Hb_001059_020--Hb_000277_060 Hb_001189_060 Hb_001189_060 Hb_000186_210--Hb_001189_060 Hb_006907_120 Hb_006907_120 Hb_000186_210--Hb_006907_120 Hb_003018_070 Hb_003018_070 Hb_000186_210--Hb_003018_070 Hb_006096_010 Hb_006096_010 Hb_000186_210--Hb_006096_010 Hb_008864_070 Hb_008864_070 Hb_000186_210--Hb_008864_070 Hb_042175_010 Hb_042175_010 Hb_013818_040--Hb_042175_010 Hb_013818_040--Hb_000272_120 Hb_003623_070 Hb_003623_070 Hb_013818_040--Hb_003623_070 Hb_005348_070 Hb_005348_070 Hb_013818_040--Hb_005348_070 Hb_044724_010 Hb_044724_010 Hb_013818_040--Hb_044724_010 Hb_003544_070 Hb_003544_070 Hb_013818_040--Hb_003544_070 Hb_005539_020 Hb_005539_020 Hb_000272_120--Hb_005539_020 Hb_005400_040 Hb_005400_040 Hb_000272_120--Hb_005400_040 Hb_002631_040 Hb_002631_040 Hb_000272_120--Hb_002631_040 Hb_011716_050 Hb_011716_050 Hb_000272_120--Hb_011716_050 Hb_004899_330 Hb_004899_330 Hb_000272_120--Hb_004899_330 Hb_000829_080 Hb_000829_080 Hb_004732_010--Hb_000829_080 Hb_010288_040 Hb_010288_040 Hb_004732_010--Hb_010288_040 Hb_141383_010 Hb_141383_010 Hb_004732_010--Hb_141383_010 Hb_007451_060 Hb_007451_060 Hb_004732_010--Hb_007451_060 Hb_000189_360 Hb_000189_360 Hb_004732_010--Hb_000189_360 Hb_115784_010 Hb_115784_010 Hb_004732_010--Hb_115784_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.363083 7.13582 0.50734 0.231359 0.190494 0.794402
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.41753 0.812636 0.15116 0.689349 0.313115

CAGE analysis