Hb_001059_020

Information

Type -
Description -
Location Contig1059: 35893-39468
Sequence    

Annotation

kegg
ID mdm:103432206
description FBD-associated F-box protein At4g10400-like
nr
ID XP_008368607.1
description PREDICTED: FBD-associated F-box protein At4g10400-like [Malus domestica]
swissprot
ID Q8H1M0
description F-box/FBD/LRR-repeat protein At2g26030 OS=Arabidopsis thaliana GN=At2g26030 PE=2 SV=2
trembl
ID A0A078CXS7
description BnaC03g00930D protein OS=Brassica napus GN=BnaC03g00930D PE=4 SV=1
Gene Ontology
ID GO:0005515
description f-box protein at1g49610 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001059_020 0.0 - - PREDICTED: FBD-associated F-box protein At4g10400-like [Malus domestica]
2 Hb_002316_040 0.2596285782 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
3 Hb_000186_210 0.2882408737 transcription factor TF Family: HB homeobox protein knotted-1, putative [Ricinus communis]
4 Hb_000014_140 0.2966647125 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
5 Hb_008453_070 0.2982593906 - - putative aquaporin [Vitis vinifera]
6 Hb_081745_010 0.3001928585 - - hypothetical protein CISIN_1g030953mg [Citrus sinensis]
7 Hb_000277_060 0.3005058125 - - hypothetical protein POPTR_0004s20690g [Populus trichocarpa]
8 Hb_022137_040 0.3055821721 - - PREDICTED: MATE efflux family protein LAL5-like [Jatropha curcas]
9 Hb_002205_100 0.3090898175 - - ATP binding protein, putative [Ricinus communis]
10 Hb_001584_220 0.3145835193 - - galactinol synthase [Manihot esculenta]
11 Hb_129204_060 0.3190264513 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 20 [Jatropha curcas]
12 Hb_008864_070 0.319167537 - - PREDICTED: uncharacterized protein LOC105803851 [Gossypium raimondii]
13 Hb_008695_030 0.3237590426 - - hypothetical protein JCGZ_12043 [Jatropha curcas]
14 Hb_000334_200 0.3254140256 desease resistance Gene Name: RVT_1 PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
15 Hb_000072_330 0.3269907746 - - conserved hypothetical protein [Ricinus communis]
16 Hb_003849_260 0.3287952174 - - PREDICTED: uncharacterized protein LOC105644666 [Jatropha curcas]
17 Hb_007218_140 0.3301805934 - - hypothetical protein JCGZ_24847 [Jatropha curcas]
18 Hb_000836_200 0.3303524878 - - -
19 Hb_000638_210 0.3329723958 - - Pectin lyase-like superfamily protein isoform 1 [Theobroma cacao]
20 Hb_015978_030 0.3342636003 - - Zinc finger protein GIS2 [Medicago truncatula]

Gene co-expression network

sample Hb_001059_020 Hb_001059_020 Hb_002316_040 Hb_002316_040 Hb_001059_020--Hb_002316_040 Hb_000186_210 Hb_000186_210 Hb_001059_020--Hb_000186_210 Hb_000014_140 Hb_000014_140 Hb_001059_020--Hb_000014_140 Hb_008453_070 Hb_008453_070 Hb_001059_020--Hb_008453_070 Hb_081745_010 Hb_081745_010 Hb_001059_020--Hb_081745_010 Hb_000277_060 Hb_000277_060 Hb_001059_020--Hb_000277_060 Hb_001860_010 Hb_001860_010 Hb_002316_040--Hb_001860_010 Hb_002316_040--Hb_000186_210 Hb_013818_040 Hb_013818_040 Hb_002316_040--Hb_013818_040 Hb_000272_120 Hb_000272_120 Hb_002316_040--Hb_000272_120 Hb_004732_010 Hb_004732_010 Hb_002316_040--Hb_004732_010 Hb_001189_060 Hb_001189_060 Hb_000186_210--Hb_001189_060 Hb_006907_120 Hb_006907_120 Hb_000186_210--Hb_006907_120 Hb_003018_070 Hb_003018_070 Hb_000186_210--Hb_003018_070 Hb_006096_010 Hb_006096_010 Hb_000186_210--Hb_006096_010 Hb_008864_070 Hb_008864_070 Hb_000186_210--Hb_008864_070 Hb_000014_140--Hb_008453_070 Hb_005389_010 Hb_005389_010 Hb_000014_140--Hb_005389_010 Hb_189237_010 Hb_189237_010 Hb_000014_140--Hb_189237_010 Hb_001250_120 Hb_001250_120 Hb_000014_140--Hb_001250_120 Hb_050495_010 Hb_050495_010 Hb_000014_140--Hb_050495_010 Hb_001250_110 Hb_001250_110 Hb_000014_140--Hb_001250_110 Hb_001922_160 Hb_001922_160 Hb_008453_070--Hb_001922_160 Hb_002411_140 Hb_002411_140 Hb_008453_070--Hb_002411_140 Hb_001514_040 Hb_001514_040 Hb_008453_070--Hb_001514_040 Hb_008453_070--Hb_001250_110 Hb_001565_120 Hb_001565_120 Hb_008453_070--Hb_001565_120 Hb_010727_010 Hb_010727_010 Hb_081745_010--Hb_010727_010 Hb_001183_010 Hb_001183_010 Hb_081745_010--Hb_001183_010 Hb_141918_010 Hb_141918_010 Hb_081745_010--Hb_141918_010 Hb_002234_190 Hb_002234_190 Hb_081745_010--Hb_002234_190 Hb_073395_010 Hb_073395_010 Hb_081745_010--Hb_073395_010 Hb_164945_040 Hb_164945_040 Hb_081745_010--Hb_164945_040 Hb_002387_080 Hb_002387_080 Hb_000277_060--Hb_002387_080 Hb_000072_330 Hb_000072_330 Hb_000277_060--Hb_000072_330 Hb_020400_040 Hb_020400_040 Hb_000277_060--Hb_020400_040 Hb_000179_240 Hb_000179_240 Hb_000277_060--Hb_000179_240 Hb_002110_240 Hb_002110_240 Hb_000277_060--Hb_002110_240 Hb_000634_070 Hb_000634_070 Hb_000277_060--Hb_000634_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.158645 2.63084 0.0348922 0.00801379 0.0320176 0.625562
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.709431 0.318959 0.150762 0.0476362 0

CAGE analysis