Hb_000920_370

Information

Type -
Description -
Location Contig920: 248886-252072
Sequence    

Annotation

kegg
ID rcu:RCOM_1452620
description Peptide transporter, putative
nr
ID KDP40528.1
description hypothetical protein JCGZ_24527 [Jatropha curcas]
swissprot
ID Q9M1I2
description Protein NRT1/ PTR FAMILY 5.4 OS=Arabidopsis thaliana GN=NPF5.4 PE=2 SV=1
trembl
ID A0A067KZV4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24527 PE=3 SV=1
Gene Ontology
ID GO:0016021
description protein nrt1 ptr family -like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62447: 251341-251678
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000920_370 0.0 - - hypothetical protein JCGZ_24527 [Jatropha curcas]
2 Hb_001959_130 0.1998450586 - - transporter, putative [Ricinus communis]
3 Hb_007305_030 0.2287282918 - - serine-threonine protein kinase, putative [Ricinus communis]
4 Hb_001123_210 0.2433669151 - - PREDICTED: uncharacterized protein LOC105647324 [Jatropha curcas]
5 Hb_001158_190 0.2534916687 - - PREDICTED: bidirectional sugar transporter SWEET10-like [Jatropha curcas]
6 Hb_001300_260 0.2556067601 - - -
7 Hb_001516_020 0.258364803 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-9-like isoform X2 [Jatropha curcas]
8 Hb_001635_020 0.2609944734 - - PREDICTED: inorganic pyrophosphatase 1-like [Jatropha curcas]
9 Hb_000749_240 0.2621305936 - - conserved hypothetical protein [Ricinus communis]
10 Hb_010897_030 0.2647189954 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000676_340 0.2700772309 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
12 Hb_000369_020 0.2712061838 - - PREDICTED: probable fructokinase-7 [Jatropha curcas]
13 Hb_144484_010 0.2724106599 - - calcineurin-like phosphoesterase [Manihot esculenta]
14 Hb_001504_140 0.2761300168 - - PREDICTED: deSI-like protein At4g17486 [Populus euphratica]
15 Hb_000099_130 0.2763553945 - - PREDICTED: uncharacterized protein LOC105645728 [Jatropha curcas]
16 Hb_001377_420 0.2769082451 - - conserved hypothetical protein [Ricinus communis]
17 Hb_002774_050 0.2813898766 - - PREDICTED: uncharacterized protein LOC105630601 [Jatropha curcas]
18 Hb_001242_050 0.2815959021 - - conserved hypothetical protein [Ricinus communis]
19 Hb_036790_020 0.2849862694 - - PREDICTED: polyadenylate-binding protein 3 [Jatropha curcas]
20 Hb_001232_140 0.2857977324 - - PREDICTED: uncharacterized protein LOC105634966 [Jatropha curcas]

Gene co-expression network

sample Hb_000920_370 Hb_000920_370 Hb_001959_130 Hb_001959_130 Hb_000920_370--Hb_001959_130 Hb_007305_030 Hb_007305_030 Hb_000920_370--Hb_007305_030 Hb_001123_210 Hb_001123_210 Hb_000920_370--Hb_001123_210 Hb_001158_190 Hb_001158_190 Hb_000920_370--Hb_001158_190 Hb_001300_260 Hb_001300_260 Hb_000920_370--Hb_001300_260 Hb_001516_020 Hb_001516_020 Hb_000920_370--Hb_001516_020 Hb_000749_240 Hb_000749_240 Hb_001959_130--Hb_000749_240 Hb_007943_190 Hb_007943_190 Hb_001959_130--Hb_007943_190 Hb_002774_050 Hb_002774_050 Hb_001959_130--Hb_002774_050 Hb_011909_110 Hb_011909_110 Hb_001959_130--Hb_011909_110 Hb_000676_340 Hb_000676_340 Hb_001959_130--Hb_000676_340 Hb_002045_180 Hb_002045_180 Hb_007305_030--Hb_002045_180 Hb_000369_020 Hb_000369_020 Hb_007305_030--Hb_000369_020 Hb_000141_020 Hb_000141_020 Hb_007305_030--Hb_000141_020 Hb_000099_130 Hb_000099_130 Hb_007305_030--Hb_000099_130 Hb_010931_050 Hb_010931_050 Hb_007305_030--Hb_010931_050 Hb_001314_020 Hb_001314_020 Hb_007305_030--Hb_001314_020 Hb_010897_030 Hb_010897_030 Hb_001123_210--Hb_010897_030 Hb_002341_020 Hb_002341_020 Hb_001123_210--Hb_002341_020 Hb_001123_210--Hb_002774_050 Hb_000072_210 Hb_000072_210 Hb_001123_210--Hb_000072_210 Hb_007192_100 Hb_007192_100 Hb_001123_210--Hb_007192_100 Hb_004052_050 Hb_004052_050 Hb_001123_210--Hb_004052_050 Hb_001158_190--Hb_010931_050 Hb_001158_190--Hb_000749_240 Hb_001511_140 Hb_001511_140 Hb_001158_190--Hb_001511_140 Hb_088538_010 Hb_088538_010 Hb_001158_190--Hb_088538_010 Hb_000788_080 Hb_000788_080 Hb_001158_190--Hb_000788_080 Hb_000261_450 Hb_000261_450 Hb_001158_190--Hb_000261_450 Hb_161785_010 Hb_161785_010 Hb_001300_260--Hb_161785_010 Hb_001300_260--Hb_007305_030 Hb_001449_050 Hb_001449_050 Hb_001300_260--Hb_001449_050 Hb_001300_260--Hb_001158_190 Hb_032264_090 Hb_032264_090 Hb_001300_260--Hb_032264_090 Hb_001242_050 Hb_001242_050 Hb_001516_020--Hb_001242_050 Hb_000297_040 Hb_000297_040 Hb_001516_020--Hb_000297_040 Hb_001516_020--Hb_001123_210 Hb_002272_280 Hb_002272_280 Hb_001516_020--Hb_002272_280 Hb_012545_050 Hb_012545_050 Hb_001516_020--Hb_012545_050 Hb_083380_010 Hb_083380_010 Hb_001516_020--Hb_083380_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.58309 0.0434901 2.70418 0.275707 0.135136
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.03098 2.87132 5.88945 0.702657 0.0431662

CAGE analysis