Hb_001516_020

Information

Type transcription factor
Description TF Family: NF-YA
Location Contig1516: 11206-34590
Sequence    

Annotation

kegg
ID tcc:TCM_024732
description Nuclear factor Y, putative
nr
ID XP_012086119.1
description PREDICTED: nuclear transcription factor Y subunit A-9-like isoform X2 [Jatropha curcas]
swissprot
ID Q84JP1
description Nuclear transcription factor Y subunit A-7 OS=Arabidopsis thaliana GN=NFYA7 PE=2 SV=1
trembl
ID A0A067K2I8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21057 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12862: 11882-19883 , PASA_asmbl_12864: 34466-34584
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001516_020 0.0 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-9-like isoform X2 [Jatropha curcas]
2 Hb_001242_050 0.1910595487 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000297_040 0.2102475599 - - pre-mRNA cleavage factor im, 25kD subunit, putative [Ricinus communis]
4 Hb_001123_210 0.2316028157 - - PREDICTED: uncharacterized protein LOC105647324 [Jatropha curcas]
5 Hb_002272_280 0.2328139267 - - phosphoglycerate mutase, putative [Ricinus communis]
6 Hb_012545_050 0.2334652271 - - PREDICTED: serine carboxypeptidase II-3-like [Jatropha curcas]
7 Hb_083380_010 0.2344860064 - - -
8 Hb_010897_030 0.2361645778 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000019_070 0.2386657646 - - PREDICTED: uncharacterized protein LOC105630200 [Jatropha curcas]
10 Hb_077399_010 0.2408589641 - - hypothetical protein POPTR_0003s09910g [Populus trichocarpa]
11 Hb_000392_380 0.2417086264 - - ubiquitin-conjugating enzyme [Medicago truncatula]
12 Hb_138585_040 0.2420812255 - - PREDICTED: proteasome subunit alpha type-4 [Jatropha curcas]
13 Hb_000788_060 0.2464570318 - - PREDICTED: uncharacterized protein LOC105629705 [Jatropha curcas]
14 Hb_002740_010 0.2491634001 - - stress-induced hydrophobic peptide [Cleistogenes songorica]
15 Hb_002631_260 0.2492538912 - - PREDICTED: proteasome subunit alpha type-2-A [Jatropha curcas]
16 Hb_001377_420 0.2506453478 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001635_020 0.2513819587 - - PREDICTED: inorganic pyrophosphatase 1-like [Jatropha curcas]
18 Hb_002843_210 0.252173754 - - PREDICTED: uncharacterized protein LOC105647178 [Jatropha curcas]
19 Hb_000836_010 0.2524534086 - - beta-cyanoalanine synthase [Hevea brasiliensis]
20 Hb_001172_100 0.2535064658 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001516_020 Hb_001516_020 Hb_001242_050 Hb_001242_050 Hb_001516_020--Hb_001242_050 Hb_000297_040 Hb_000297_040 Hb_001516_020--Hb_000297_040 Hb_001123_210 Hb_001123_210 Hb_001516_020--Hb_001123_210 Hb_002272_280 Hb_002272_280 Hb_001516_020--Hb_002272_280 Hb_012545_050 Hb_012545_050 Hb_001516_020--Hb_012545_050 Hb_083380_010 Hb_083380_010 Hb_001516_020--Hb_083380_010 Hb_000788_060 Hb_000788_060 Hb_001242_050--Hb_000788_060 Hb_001377_420 Hb_001377_420 Hb_001242_050--Hb_001377_420 Hb_005496_090 Hb_005496_090 Hb_001242_050--Hb_005496_090 Hb_000465_270 Hb_000465_270 Hb_001242_050--Hb_000465_270 Hb_075247_010 Hb_075247_010 Hb_001242_050--Hb_075247_010 Hb_158092_010 Hb_158092_010 Hb_001242_050--Hb_158092_010 Hb_004659_060 Hb_004659_060 Hb_000297_040--Hb_004659_060 Hb_114310_080 Hb_114310_080 Hb_000297_040--Hb_114310_080 Hb_000224_120 Hb_000224_120 Hb_000297_040--Hb_000224_120 Hb_001008_090 Hb_001008_090 Hb_000297_040--Hb_001008_090 Hb_000019_070 Hb_000019_070 Hb_000297_040--Hb_000019_070 Hb_011377_050 Hb_011377_050 Hb_000297_040--Hb_011377_050 Hb_010897_030 Hb_010897_030 Hb_001123_210--Hb_010897_030 Hb_002341_020 Hb_002341_020 Hb_001123_210--Hb_002341_020 Hb_002774_050 Hb_002774_050 Hb_001123_210--Hb_002774_050 Hb_000072_210 Hb_000072_210 Hb_001123_210--Hb_000072_210 Hb_007192_100 Hb_007192_100 Hb_001123_210--Hb_007192_100 Hb_004052_050 Hb_004052_050 Hb_001123_210--Hb_004052_050 Hb_009646_040 Hb_009646_040 Hb_002272_280--Hb_009646_040 Hb_002272_280--Hb_011377_050 Hb_002272_280--Hb_000019_070 Hb_000638_170 Hb_000638_170 Hb_002272_280--Hb_000638_170 Hb_000161_060 Hb_000161_060 Hb_002272_280--Hb_000161_060 Hb_000521_130 Hb_000521_130 Hb_002272_280--Hb_000521_130 Hb_001488_370 Hb_001488_370 Hb_012545_050--Hb_001488_370 Hb_000264_020 Hb_000264_020 Hb_012545_050--Hb_000264_020 Hb_001437_130 Hb_001437_130 Hb_012545_050--Hb_001437_130 Hb_000373_180 Hb_000373_180 Hb_012545_050--Hb_000373_180 Hb_000392_380 Hb_000392_380 Hb_012545_050--Hb_000392_380 Hb_000239_030 Hb_000239_030 Hb_012545_050--Hb_000239_030 Hb_083380_010--Hb_005496_090 Hb_138585_040 Hb_138585_040 Hb_083380_010--Hb_138585_040 Hb_001157_080 Hb_001157_080 Hb_083380_010--Hb_001157_080 Hb_001172_100 Hb_001172_100 Hb_083380_010--Hb_001172_100 Hb_005278_040 Hb_005278_040 Hb_083380_010--Hb_005278_040 Hb_130719_010 Hb_130719_010 Hb_083380_010--Hb_130719_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.649271 2.41004 0.333223 10.405 0.399635 1.695
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.84279 11.5928 10.276 1.26035 0.0973981

CAGE analysis