Hb_007943_190

Information

Type -
Description -
Location Contig7943: 153046-153756
Sequence    

Annotation

kegg
ID rcu:RCOM_1052500
description cytoplasmic dynein light chain, putative
nr
ID XP_002514287.1
description cytoplasmic dynein light chain, putative [Ricinus communis]
swissprot
ID P63170
description Dynein light chain 1, cytoplasmic OS=Rattus norvegicus GN=Dynll1 PE=1 SV=1
trembl
ID B9RKP3
description Cytoplasmic dynein light chain, putative OS=Ricinus communis GN=RCOM_1052500 PE=4 SV=1
Gene Ontology
ID GO:0005875
description dynein light chain flagellar outer arm-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007943_190 0.0 - - cytoplasmic dynein light chain, putative [Ricinus communis]
2 Hb_027751_060 0.1540829547 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B [Jatropha curcas]
3 Hb_005496_090 0.1565416892 - - PREDICTED: adenine phosphoribosyltransferase 1-like [Jatropha curcas]
4 Hb_083380_010 0.163446658 - - -
5 Hb_012163_020 0.1652649862 - - PREDICTED: uncharacterized protein LOC105650815 isoform X3 [Jatropha curcas]
6 Hb_023344_050 0.1723433426 - - PREDICTED: uncharacterized protein LOC105644474 [Jatropha curcas]
7 Hb_025645_030 0.1734982154 - - -
8 Hb_013893_010 0.17593302 - - neutral/alkaline invertase 3 [Hevea brasiliensis]
9 Hb_000056_250 0.1775395827 - - PREDICTED: haloacid dehalogenase-like hydrolase domain-containing protein 3 [Jatropha curcas]
10 Hb_001377_420 0.1786293306 - - conserved hypothetical protein [Ricinus communis]
11 Hb_003097_060 0.1802821276 - - PREDICTED: GEM-like protein 4 [Jatropha curcas]
12 Hb_000260_790 0.1807325853 - - NADH dehydrogenase 1 alpha subcomplex subunit 12 isoform 1 [Theobroma cacao]
13 Hb_000178_120 0.1816645829 - - PREDICTED: histone H2B [Jatropha curcas]
14 Hb_077399_010 0.183490575 - - hypothetical protein POPTR_0003s09910g [Populus trichocarpa]
15 Hb_010402_050 0.1836340006 - - -
16 Hb_005167_030 0.1850852291 - - PREDICTED: serine/threonine-protein kinase At5g01020-like, partial [Camelina sativa]
17 Hb_005278_040 0.1862752779 - - PREDICTED: sorcin-like isoform X1 [Populus euphratica]
18 Hb_130719_010 0.1879307243 - - V-type proton ATPase subunit E [Hevea brasiliensis]
19 Hb_000049_050 0.188912876 - - PREDICTED: uncharacterized protein LOC105644474 [Jatropha curcas]
20 Hb_003117_010 0.1928239831 - - PREDICTED: uncharacterized protein LOC100259103 isoform X1 [Vitis vinifera]

Gene co-expression network

sample Hb_007943_190 Hb_007943_190 Hb_027751_060 Hb_027751_060 Hb_007943_190--Hb_027751_060 Hb_005496_090 Hb_005496_090 Hb_007943_190--Hb_005496_090 Hb_083380_010 Hb_083380_010 Hb_007943_190--Hb_083380_010 Hb_012163_020 Hb_012163_020 Hb_007943_190--Hb_012163_020 Hb_023344_050 Hb_023344_050 Hb_007943_190--Hb_023344_050 Hb_025645_030 Hb_025645_030 Hb_007943_190--Hb_025645_030 Hb_000056_250 Hb_000056_250 Hb_027751_060--Hb_000056_250 Hb_000096_150 Hb_000096_150 Hb_027751_060--Hb_000096_150 Hb_000046_350 Hb_000046_350 Hb_027751_060--Hb_000046_350 Hb_005167_030 Hb_005167_030 Hb_027751_060--Hb_005167_030 Hb_000417_260 Hb_000417_260 Hb_027751_060--Hb_000417_260 Hb_001284_030 Hb_001284_030 Hb_027751_060--Hb_001284_030 Hb_130719_010 Hb_130719_010 Hb_005496_090--Hb_130719_010 Hb_005496_090--Hb_000056_250 Hb_000016_170 Hb_000016_170 Hb_005496_090--Hb_000016_170 Hb_138585_040 Hb_138585_040 Hb_005496_090--Hb_138585_040 Hb_005496_090--Hb_083380_010 Hb_003291_020 Hb_003291_020 Hb_005496_090--Hb_003291_020 Hb_083380_010--Hb_138585_040 Hb_001157_080 Hb_001157_080 Hb_083380_010--Hb_001157_080 Hb_001172_100 Hb_001172_100 Hb_083380_010--Hb_001172_100 Hb_005278_040 Hb_005278_040 Hb_083380_010--Hb_005278_040 Hb_083380_010--Hb_130719_010 Hb_117807_010 Hb_117807_010 Hb_012163_020--Hb_117807_010 Hb_003097_060 Hb_003097_060 Hb_012163_020--Hb_003097_060 Hb_000170_120 Hb_000170_120 Hb_012163_020--Hb_000170_120 Hb_001377_420 Hb_001377_420 Hb_012163_020--Hb_001377_420 Hb_000340_310 Hb_000340_310 Hb_012163_020--Hb_000340_310 Hb_000928_130 Hb_000928_130 Hb_023344_050--Hb_000928_130 Hb_002026_120 Hb_002026_120 Hb_023344_050--Hb_002026_120 Hb_023344_050--Hb_025645_030 Hb_023344_050--Hb_005278_040 Hb_001240_020 Hb_001240_020 Hb_023344_050--Hb_001240_020 Hb_023344_050--Hb_000056_250 Hb_004162_180 Hb_004162_180 Hb_025645_030--Hb_004162_180 Hb_001225_010 Hb_001225_010 Hb_025645_030--Hb_001225_010 Hb_000110_170 Hb_000110_170 Hb_025645_030--Hb_000110_170 Hb_025645_030--Hb_001172_100 Hb_006420_030 Hb_006420_030 Hb_025645_030--Hb_006420_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.096535 0.340705 0.502168 6.11332 0.919479 0.577362
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.81521 9.23772 10.7491 2.76721 3.91516

CAGE analysis