Hb_006420_030

Information

Type -
Description -
Location Contig6420: 37549-41989
Sequence    

Annotation

kegg
ID rcu:RCOM_0699600
description Microtubule-associated protein TORTIFOLIA1, putative
nr
ID XP_012092005.1
description PREDICTED: microtubule-associated protein TORTIFOLIA1 [Jatropha curcas]
swissprot
ID Q9T041
description Microtubule-associated protein TORTIFOLIA1 OS=Arabidopsis thaliana GN=TOR1 PE=1 SV=2
trembl
ID A0A067JEU8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21744 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52195: 37606-41501
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006420_030 0.0 - - PREDICTED: microtubule-associated protein TORTIFOLIA1 [Jatropha curcas]
2 Hb_025645_030 0.1390641919 - - -
3 Hb_000000_470 0.1519770415 - - PREDICTED: lysophospholipid acyltransferase LPEAT1 isoform X4 [Jatropha curcas]
4 Hb_007218_150 0.1528030913 - - RecName: Full=Profilin-3; AltName: Full=Pollen allergen Hev b 8.0201; AltName: Allergen=Hev b 8.0201 [Hevea brasiliensis]
5 Hb_000069_660 0.1536516748 - - PREDICTED: mitochondrial carrier protein MTM1 isoform X1 [Jatropha curcas]
6 Hb_003581_220 0.1586820751 - - unnamed protein product [Vitis vinifera]
7 Hb_001225_010 0.1640745501 - - unnamed protein product [Coffea canephora]
8 Hb_000836_010 0.1770769203 - - beta-cyanoalanine synthase [Hevea brasiliensis]
9 Hb_001172_100 0.1778217964 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3-like isoform X1 [Jatropha curcas]
10 Hb_010402_050 0.1792484902 - - -
11 Hb_000816_230 0.179358903 - - PREDICTED: adenine/guanine permease AZG1 [Jatropha curcas]
12 Hb_001157_010 0.1798679916 - - deoxyhypusine synthase, putative [Ricinus communis]
13 Hb_002609_230 0.1824119784 - - PREDICTED: UDP-glycosyltransferase 71D1-like [Jatropha curcas]
14 Hb_000373_180 0.1843877849 transcription factor TF Family: Trihelix hypothetical protein JCGZ_25182 [Jatropha curcas]
15 Hb_001076_020 0.1854224474 - - PREDICTED: cytochrome b-c1 complex subunit 8 [Eucalyptus grandis]
16 Hb_003326_020 0.1864614031 - - PREDICTED: replication protein A 32 kDa subunit B [Jatropha curcas]
17 Hb_000976_250 0.1874911248 - - -
18 Hb_000635_210 0.189128539 - - unknown [Populus trichocarpa]
19 Hb_000272_070 0.1896571381 - - snare protein YKt [Hevea brasiliensis]
20 Hb_000069_550 0.1906530118 - - PREDICTED: uncharacterized protein LOC104596457 isoform X1 [Nelumbo nucifera]

Gene co-expression network

sample Hb_006420_030 Hb_006420_030 Hb_025645_030 Hb_025645_030 Hb_006420_030--Hb_025645_030 Hb_000000_470 Hb_000000_470 Hb_006420_030--Hb_000000_470 Hb_007218_150 Hb_007218_150 Hb_006420_030--Hb_007218_150 Hb_000069_660 Hb_000069_660 Hb_006420_030--Hb_000069_660 Hb_003581_220 Hb_003581_220 Hb_006420_030--Hb_003581_220 Hb_001225_010 Hb_001225_010 Hb_006420_030--Hb_001225_010 Hb_023344_050 Hb_023344_050 Hb_025645_030--Hb_023344_050 Hb_004162_180 Hb_004162_180 Hb_025645_030--Hb_004162_180 Hb_025645_030--Hb_001225_010 Hb_000110_170 Hb_000110_170 Hb_025645_030--Hb_000110_170 Hb_001172_100 Hb_001172_100 Hb_025645_030--Hb_001172_100 Hb_007317_160 Hb_007317_160 Hb_000000_470--Hb_007317_160 Hb_005527_040 Hb_005527_040 Hb_000000_470--Hb_005527_040 Hb_006452_040 Hb_006452_040 Hb_000000_470--Hb_006452_040 Hb_027073_050 Hb_027073_050 Hb_000000_470--Hb_027073_050 Hb_000069_550 Hb_000069_550 Hb_000000_470--Hb_000069_550 Hb_006569_100 Hb_006569_100 Hb_000000_470--Hb_006569_100 Hb_007218_150--Hb_007317_160 Hb_032969_030 Hb_032969_030 Hb_007218_150--Hb_032969_030 Hb_000300_390 Hb_000300_390 Hb_007218_150--Hb_000300_390 Hb_005663_120 Hb_005663_120 Hb_007218_150--Hb_005663_120 Hb_000789_110 Hb_000789_110 Hb_007218_150--Hb_000789_110 Hb_000167_030 Hb_000167_030 Hb_007218_150--Hb_000167_030 Hb_000530_070 Hb_000530_070 Hb_000069_660--Hb_000530_070 Hb_000069_660--Hb_003581_220 Hb_001846_070 Hb_001846_070 Hb_000069_660--Hb_001846_070 Hb_002182_030 Hb_002182_030 Hb_000069_660--Hb_002182_030 Hb_001157_010 Hb_001157_010 Hb_000069_660--Hb_001157_010 Hb_007594_120 Hb_007594_120 Hb_000069_660--Hb_007594_120 Hb_003581_220--Hb_032969_030 Hb_002603_150 Hb_002603_150 Hb_003581_220--Hb_002603_150 Hb_003581_220--Hb_000530_070 Hb_010402_050 Hb_010402_050 Hb_003581_220--Hb_010402_050 Hb_003581_220--Hb_001846_070 Hb_001076_020 Hb_001076_020 Hb_003581_220--Hb_001076_020 Hb_001225_010--Hb_001172_100 Hb_003020_330 Hb_003020_330 Hb_001225_010--Hb_003020_330 Hb_001225_010--Hb_000110_170 Hb_000203_020 Hb_000203_020 Hb_001225_010--Hb_000203_020 Hb_001449_090 Hb_001449_090 Hb_001225_010--Hb_001449_090 Hb_000878_020 Hb_000878_020 Hb_001225_010--Hb_000878_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.21973 0.723058 1.52624 19.2369 12.4274 3.40355
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
22.1623 61.6761 40.5957 6.09854 8.94487

CAGE analysis