Hb_007305_030

Information

Type -
Description -
Location Contig7305: 27617-30493
Sequence    

Annotation

kegg
ID rcu:RCOM_1691050
description serine-threonine protein kinase, putative (EC:2.7.10.2)
nr
ID XP_002509924.1
description serine-threonine protein kinase, putative [Ricinus communis]
swissprot
ID P25848
description Light-sensor Protein kinase OS=Ceratodon purpureus GN=PHY1 PE=3 SV=3
trembl
ID B9RCP0
description Serine-threonine protein kinase, putative OS=Ricinus communis GN=RCOM_1691050 PE=4 SV=1
Gene Ontology
ID GO:0004715
description mitogen-activated protein kinase kinase kinase 7-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55949: 27336-28233 , PASA_asmbl_55952: 29703-30082
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007305_030 0.0 - - serine-threonine protein kinase, putative [Ricinus communis]
2 Hb_002045_180 0.1877154308 - - PREDICTED: uncharacterized protein LOC105649915 [Jatropha curcas]
3 Hb_000369_020 0.1915922953 - - PREDICTED: probable fructokinase-7 [Jatropha curcas]
4 Hb_000141_020 0.1919900444 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 6 [Pyrus x bretschneideri]
5 Hb_000099_130 0.192136603 - - PREDICTED: uncharacterized protein LOC105645728 [Jatropha curcas]
6 Hb_010931_050 0.1956315386 transcription factor TF Family: Jumonji PREDICTED: lysine-specific demethylase JMJ25-like [Jatropha curcas]
7 Hb_001314_020 0.2075351667 - - PREDICTED: alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1-like isoform X1 [Jatropha curcas]
8 Hb_017987_060 0.2124490542 - - hypothetical protein JCGZ_15971 [Jatropha curcas]
9 Hb_000196_080 0.2143007785 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH79-like isoform X1 [Jatropha curcas]
10 Hb_008948_100 0.2184329683 - - PREDICTED: SPX domain-containing protein 1-like [Jatropha curcas]
11 Hb_001158_190 0.2199779437 - - PREDICTED: bidirectional sugar transporter SWEET10-like [Jatropha curcas]
12 Hb_000424_210 0.2205528759 - - PREDICTED: uncharacterized protein LOC105638063 isoform X1 [Jatropha curcas]
13 Hb_000419_060 0.2239754091 - - PREDICTED: patatin-like protein 6 [Jatropha curcas]
14 Hb_010897_030 0.2251518607 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001123_210 0.2258152623 - - PREDICTED: uncharacterized protein LOC105647324 [Jatropha curcas]
16 Hb_001159_080 0.2263918822 - - hypothetical protein JCGZ_20745 [Jatropha curcas]
17 Hb_000260_580 0.2269717501 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000920_370 0.2287282918 - - hypothetical protein JCGZ_24527 [Jatropha curcas]
19 Hb_000260_310 0.2289486481 - - PREDICTED: uncharacterized protein LOC105649060 [Jatropha curcas]
20 Hb_003504_020 0.2289790146 - - PREDICTED: uncharacterized protein LOC105647732 [Jatropha curcas]

Gene co-expression network

sample Hb_007305_030 Hb_007305_030 Hb_002045_180 Hb_002045_180 Hb_007305_030--Hb_002045_180 Hb_000369_020 Hb_000369_020 Hb_007305_030--Hb_000369_020 Hb_000141_020 Hb_000141_020 Hb_007305_030--Hb_000141_020 Hb_000099_130 Hb_000099_130 Hb_007305_030--Hb_000099_130 Hb_010931_050 Hb_010931_050 Hb_007305_030--Hb_010931_050 Hb_001314_020 Hb_001314_020 Hb_007305_030--Hb_001314_020 Hb_002045_180--Hb_001314_020 Hb_000406_120 Hb_000406_120 Hb_002045_180--Hb_000406_120 Hb_000592_020 Hb_000592_020 Hb_002045_180--Hb_000592_020 Hb_002045_180--Hb_000141_020 Hb_007429_030 Hb_007429_030 Hb_002045_180--Hb_007429_030 Hb_002110_020 Hb_002110_020 Hb_002045_180--Hb_002110_020 Hb_002374_400 Hb_002374_400 Hb_000369_020--Hb_002374_400 Hb_003972_080 Hb_003972_080 Hb_000369_020--Hb_003972_080 Hb_000419_060 Hb_000419_060 Hb_000369_020--Hb_000419_060 Hb_000369_020--Hb_010931_050 Hb_015690_020 Hb_015690_020 Hb_000369_020--Hb_015690_020 Hb_003504_020 Hb_003504_020 Hb_000141_020--Hb_003504_020 Hb_000125_030 Hb_000125_030 Hb_000141_020--Hb_000125_030 Hb_000141_020--Hb_000406_120 Hb_000141_020--Hb_000099_130 Hb_001956_070 Hb_001956_070 Hb_000141_020--Hb_001956_070 Hb_001159_080 Hb_001159_080 Hb_000141_020--Hb_001159_080 Hb_001135_210 Hb_001135_210 Hb_000099_130--Hb_001135_210 Hb_001232_140 Hb_001232_140 Hb_000099_130--Hb_001232_140 Hb_000099_130--Hb_001159_080 Hb_000424_210 Hb_000424_210 Hb_000099_130--Hb_000424_210 Hb_162275_030 Hb_162275_030 Hb_000099_130--Hb_162275_030 Hb_000836_130 Hb_000836_130 Hb_010931_050--Hb_000836_130 Hb_000784_030 Hb_000784_030 Hb_010931_050--Hb_000784_030 Hb_000141_030 Hb_000141_030 Hb_010931_050--Hb_000141_030 Hb_001357_120 Hb_001357_120 Hb_010931_050--Hb_001357_120 Hb_000084_320 Hb_000084_320 Hb_010931_050--Hb_000084_320 Hb_000963_140 Hb_000963_140 Hb_010931_050--Hb_000963_140 Hb_004607_030 Hb_004607_030 Hb_001314_020--Hb_004607_030 Hb_000789_220 Hb_000789_220 Hb_001314_020--Hb_000789_220 Hb_025557_030 Hb_025557_030 Hb_001314_020--Hb_025557_030 Hb_011030_020 Hb_011030_020 Hb_001314_020--Hb_011030_020 Hb_001314_020--Hb_000406_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.30098 13.5981 1.25298 4.93047 1.15868 1.79338
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
26.6712 13.4714 30.2904 3.22829 1.81449

CAGE analysis