Hb_004218_210

Information

Type transcription factor
Description TF Family: Orphans
Location Contig4218: 203190-204005
Sequence    

Annotation

kegg
ID rcu:RCOM_1452640
description Two-component response regulator ARR8, putative
nr
ID KDP40526.1
description hypothetical protein JCGZ_24525 [Jatropha curcas]
swissprot
ID O80366
description Two-component response regulator ARR9 OS=Arabidopsis thaliana GN=ARR9 PE=1 SV=1
trembl
ID A0A067KWD7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24525 PE=4 SV=1
Gene Ontology
ID GO:0005622
description two-component response regulator arr8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004218_210 0.0 transcription factor TF Family: Orphans hypothetical protein JCGZ_24525 [Jatropha curcas]
2 Hb_000613_160 0.1573349813 - - coated vesicle membrane protein, putative [Ricinus communis]
3 Hb_000453_300 0.1622131242 - - latex cystatin [Hevea brasiliensis]
4 Hb_000575_020 0.1732845047 - - PREDICTED: copper-transporting ATPase PAA1, chloroplastic [Jatropha curcas]
5 Hb_088538_010 0.1860234469 - - hypothetical protein JCGZ_12177 [Jatropha curcas]
6 Hb_001507_070 0.1865016304 - - conserved hypothetical protein [Ricinus communis]
7 Hb_011004_010 0.1930359417 - - Mitochondrial carnitine/acylcarnitine carrier protein, putative [Ricinus communis]
8 Hb_004108_090 0.196894307 - - PREDICTED: uncharacterized protein LOC105650231 [Jatropha curcas]
9 Hb_006738_010 0.1991892284 - - PREDICTED: uncharacterized protein LOC105634993 [Jatropha curcas]
10 Hb_000788_080 0.1998264881 - - PREDICTED: uncharacterized protein LOC105629703 isoform X1 [Jatropha curcas]
11 Hb_001159_200 0.2016883537 - - PREDICTED: clp protease-related protein At4g12060, chloroplastic-like [Jatropha curcas]
12 Hb_002704_050 0.205495973 - - cysteine-type peptidase, putative [Ricinus communis]
13 Hb_004567_020 0.2058169846 - - Small ubiquitin-related modifier 2 [Morus notabilis]
14 Hb_000592_060 0.206395017 - - PREDICTED: ras-related protein RABA6a [Populus euphratica]
15 Hb_001785_040 0.2067045464 - - cytochrome b5 isoform Cb5-A [Vernicia fordii]
16 Hb_003371_100 0.2077528816 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
17 Hb_000836_130 0.2095341627 - - PREDICTED: uncharacterized protein LOC105642953 isoform X2 [Jatropha curcas]
18 Hb_000260_200 0.209543926 - - -
19 Hb_000163_210 0.2095567638 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 5-B [Tarenaya hassleriana]
20 Hb_104010_010 0.2099622881 - - hypothetical protein JCGZ_26423 [Jatropha curcas]

Gene co-expression network

sample Hb_004218_210 Hb_004218_210 Hb_000613_160 Hb_000613_160 Hb_004218_210--Hb_000613_160 Hb_000453_300 Hb_000453_300 Hb_004218_210--Hb_000453_300 Hb_000575_020 Hb_000575_020 Hb_004218_210--Hb_000575_020 Hb_088538_010 Hb_088538_010 Hb_004218_210--Hb_088538_010 Hb_001507_070 Hb_001507_070 Hb_004218_210--Hb_001507_070 Hb_011004_010 Hb_011004_010 Hb_004218_210--Hb_011004_010 Hb_000788_080 Hb_000788_080 Hb_000613_160--Hb_000788_080 Hb_005000_160 Hb_005000_160 Hb_000613_160--Hb_005000_160 Hb_000613_160--Hb_001507_070 Hb_002704_050 Hb_002704_050 Hb_000613_160--Hb_002704_050 Hb_001276_060 Hb_001276_060 Hb_000613_160--Hb_001276_060 Hb_000979_250 Hb_000979_250 Hb_000613_160--Hb_000979_250 Hb_012799_020 Hb_012799_020 Hb_000453_300--Hb_012799_020 Hb_000453_300--Hb_001507_070 Hb_000281_230 Hb_000281_230 Hb_000453_300--Hb_000281_230 Hb_104010_010 Hb_104010_010 Hb_000453_300--Hb_104010_010 Hb_004209_030 Hb_004209_030 Hb_000453_300--Hb_004209_030 Hb_003050_070 Hb_003050_070 Hb_000453_300--Hb_003050_070 Hb_000575_020--Hb_011004_010 Hb_004108_090 Hb_004108_090 Hb_000575_020--Hb_004108_090 Hb_000032_040 Hb_000032_040 Hb_000575_020--Hb_000032_040 Hb_000575_020--Hb_001507_070 Hb_000742_270 Hb_000742_270 Hb_000575_020--Hb_000742_270 Hb_000012_130 Hb_000012_130 Hb_000575_020--Hb_000012_130 Hb_148209_060 Hb_148209_060 Hb_088538_010--Hb_148209_060 Hb_000545_170 Hb_000545_170 Hb_088538_010--Hb_000545_170 Hb_002450_070 Hb_002450_070 Hb_088538_010--Hb_002450_070 Hb_088538_010--Hb_000453_300 Hb_002045_200 Hb_002045_200 Hb_088538_010--Hb_002045_200 Hb_001507_070--Hb_000742_270 Hb_001507_070--Hb_011004_010 Hb_003371_100 Hb_003371_100 Hb_001507_070--Hb_003371_100 Hb_148121_010 Hb_148121_010 Hb_001507_070--Hb_148121_010 Hb_000215_180 Hb_000215_180 Hb_001507_070--Hb_000215_180 Hb_001507_070--Hb_000032_040 Hb_011004_010--Hb_000032_040 Hb_011004_010--Hb_000742_270 Hb_011004_010--Hb_003371_100 Hb_000175_610 Hb_000175_610 Hb_011004_010--Hb_000175_610
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.31583 0.108663 0.0834031 0.249927 0 0.09063
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.70382 2.31751 1.48806 0.119859 0.547858

CAGE analysis