Hb_148209_060

Information

Type -
Description -
Location Contig148209: 46254-48614
Sequence    

Annotation

kegg
ID pop:POPTR_0009s11720g
description POPTRDRAFT_804217; hypothetical protein
nr
ID XP_012069789.1
description PREDICTED: BURP domain-containing protein 3-like [Jatropha curcas]
swissprot
ID Q942D4
description BURP domain-containing protein 3 OS=Oryza sativa subsp. japonica GN=BURP3 PE=2 SV=1
trembl
ID A0A067LCQ5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10076 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_148209_060 0.0 - - PREDICTED: BURP domain-containing protein 3-like [Jatropha curcas]
2 Hb_088538_010 0.1545823785 - - hypothetical protein JCGZ_12177 [Jatropha curcas]
3 Hb_003144_050 0.2183494473 - - PREDICTED: WAT1-related protein At5g64700 [Jatropha curcas]
4 Hb_000545_170 0.2238889096 - - PREDICTED: putative calcium-transporting ATPase 11, plasma membrane-type isoform X2 [Jatropha curcas]
5 Hb_003913_140 0.2246935512 - - PREDICTED: uncharacterized protein LOC105640324 [Jatropha curcas]
6 Hb_001902_120 0.2309937079 - - PREDICTED: uncharacterized protein LOC105648455 isoform X2 [Jatropha curcas]
7 Hb_002045_200 0.2415775563 - - PREDICTED: beta-carotene isomerase D27, chloroplastic [Jatropha curcas]
8 Hb_001842_130 0.2439785679 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000906_130 0.244182509 - - -
10 Hb_002450_070 0.2461871369 - - (S)-N-methylcoclaurine 3'-hydroxylase isozyme, putative [Ricinus communis]
11 Hb_003124_060 0.2527110304 - - Beta-ureidopropionase, putative [Ricinus communis]
12 Hb_000720_190 0.2530261274 - - unknown [Populus trichocarpa x Populus deltoides]
13 Hb_000130_030 0.2548462126 - - PREDICTED: small ubiquitin-related modifier 2-A-like [Eucalyptus grandis]
14 Hb_179520_010 0.2549833309 - - PREDICTED: uncharacterized protein LOC105763691 [Gossypium raimondii]
15 Hb_108528_010 0.2552927021 - - unnamed protein product [Coffea canephora]
16 Hb_173281_010 0.2558487124 - - Pectin lyase-like superfamily protein isoform 1 [Theobroma cacao]
17 Hb_000749_240 0.261272906 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000363_150 0.2629223993 - - hypothetical protein POPTR_0011s09040g [Populus trichocarpa]
19 Hb_002918_040 0.2639157691 transcription factor TF Family: SBP Squamosa promoter-binding protein, putative [Ricinus communis]
20 Hb_001158_190 0.2697755951 - - PREDICTED: bidirectional sugar transporter SWEET10-like [Jatropha curcas]

Gene co-expression network

sample Hb_148209_060 Hb_148209_060 Hb_088538_010 Hb_088538_010 Hb_148209_060--Hb_088538_010 Hb_003144_050 Hb_003144_050 Hb_148209_060--Hb_003144_050 Hb_000545_170 Hb_000545_170 Hb_148209_060--Hb_000545_170 Hb_003913_140 Hb_003913_140 Hb_148209_060--Hb_003913_140 Hb_001902_120 Hb_001902_120 Hb_148209_060--Hb_001902_120 Hb_002045_200 Hb_002045_200 Hb_148209_060--Hb_002045_200 Hb_088538_010--Hb_000545_170 Hb_002450_070 Hb_002450_070 Hb_088538_010--Hb_002450_070 Hb_004218_210 Hb_004218_210 Hb_088538_010--Hb_004218_210 Hb_000453_300 Hb_000453_300 Hb_088538_010--Hb_000453_300 Hb_088538_010--Hb_002045_200 Hb_173281_010 Hb_173281_010 Hb_003144_050--Hb_173281_010 Hb_000130_030 Hb_000130_030 Hb_003144_050--Hb_000130_030 Hb_003144_050--Hb_088538_010 Hb_003286_020 Hb_003286_020 Hb_003144_050--Hb_003286_020 Hb_104000_010 Hb_104000_010 Hb_003144_050--Hb_104000_010 Hb_000545_170--Hb_002450_070 Hb_001959_260 Hb_001959_260 Hb_000545_170--Hb_001959_260 Hb_000563_560 Hb_000563_560 Hb_000545_170--Hb_000563_560 Hb_000545_170--Hb_003913_140 Hb_104010_010 Hb_104010_010 Hb_000545_170--Hb_104010_010 Hb_001741_040 Hb_001741_040 Hb_003913_140--Hb_001741_040 Hb_003913_140--Hb_001902_120 Hb_003913_140--Hb_173281_010 Hb_003913_140--Hb_002045_200 Hb_003913_140--Hb_002450_070 Hb_001902_120--Hb_002045_200 Hb_052941_010 Hb_052941_010 Hb_001902_120--Hb_052941_010 Hb_005568_010 Hb_005568_010 Hb_001902_120--Hb_005568_010 Hb_001425_050 Hb_001425_050 Hb_001902_120--Hb_001425_050 Hb_179520_010 Hb_179520_010 Hb_001902_120--Hb_179520_010 Hb_010174_070 Hb_010174_070 Hb_001902_120--Hb_010174_070 Hb_002326_170 Hb_002326_170 Hb_002045_200--Hb_002326_170 Hb_002045_200--Hb_052941_010 Hb_002045_200--Hb_001425_050 Hb_002045_200--Hb_005568_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0.0104157 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.331012 0.11162 0.211421 0.0296169 0.0392658

CAGE analysis