Hb_053373_010

Information

Type -
Description -
Location Contig53373: 1819-2288
Sequence    

Annotation

kegg
ID rcu:RCOM_0121080
description Rhicadhesin receptor precursor, putative (EC:1.15.1.1)
nr
ID XP_002531226.1
description Rhicadhesin receptor precursor, putative [Ricinus communis]
swissprot
ID Q652P9
description Germin-like protein 9-3 OS=Oryza sativa subsp. japonica GN=Os09g0568700 PE=2 SV=1
trembl
ID B9SZ07
description Rhicadhesin receptor, putative OS=Ricinus communis GN=RCOM_0121080 PE=4 SV=1
Gene Ontology
ID GO:0005576
description germin-like protein 9-3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_053373_010 0.0 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
2 Hb_000130_030 0.1445129483 - - PREDICTED: small ubiquitin-related modifier 2-A-like [Eucalyptus grandis]
3 Hb_135585_010 0.1643015885 - - -
4 Hb_128524_010 0.1976567512 - - PREDICTED: polyadenylate-binding protein 7 isoform X1 [Jatropha curcas]
5 Hb_028285_030 0.1978330637 - - PREDICTED: protein GLUTAMINE DUMPER 1-like [Elaeis guineensis]
6 Hb_000001_120 0.1990365623 - - hypothetical protein JCGZ_03063 [Jatropha curcas]
7 Hb_002780_050 0.2045401562 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105169583 [Sesamum indicum]
8 Hb_002245_040 0.2122471329 - - thioredoxin h [Hevea brasiliensis]
9 Hb_009038_010 0.2242308163 - - latex cystatin [Hevea brasiliensis]
10 Hb_005616_030 0.2279762069 - - PREDICTED: wall-associated receptor kinase-like 1 [Eucalyptus grandis]
11 Hb_000264_130 0.2598907172 - - PREDICTED: uncharacterized protein LOC103870402 [Brassica rapa]
12 Hb_000120_360 0.2664849407 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001534_020 0.269832118 - - conserved hypothetical protein [Ricinus communis]
14 Hb_002045_200 0.2734555849 - - PREDICTED: beta-carotene isomerase D27, chloroplastic [Jatropha curcas]
15 Hb_148209_060 0.2763967363 - - PREDICTED: BURP domain-containing protein 3-like [Jatropha curcas]
16 Hb_010174_010 0.2774392504 - - PREDICTED: protein terminal ear1 [Jatropha curcas]
17 Hb_000956_140 0.2776267072 - - -
18 Hb_001959_260 0.2791937551 - - -
19 Hb_088538_010 0.2796303535 - - hypothetical protein JCGZ_12177 [Jatropha curcas]
20 Hb_137268_010 0.2810218357 - - -

Gene co-expression network

sample Hb_053373_010 Hb_053373_010 Hb_000130_030 Hb_000130_030 Hb_053373_010--Hb_000130_030 Hb_135585_010 Hb_135585_010 Hb_053373_010--Hb_135585_010 Hb_128524_010 Hb_128524_010 Hb_053373_010--Hb_128524_010 Hb_028285_030 Hb_028285_030 Hb_053373_010--Hb_028285_030 Hb_000001_120 Hb_000001_120 Hb_053373_010--Hb_000001_120 Hb_002780_050 Hb_002780_050 Hb_053373_010--Hb_002780_050 Hb_002045_200 Hb_002045_200 Hb_000130_030--Hb_002045_200 Hb_005616_030 Hb_005616_030 Hb_000130_030--Hb_005616_030 Hb_003144_050 Hb_003144_050 Hb_000130_030--Hb_003144_050 Hb_000130_030--Hb_028285_030 Hb_000130_030--Hb_135585_010 Hb_135585_010--Hb_128524_010 Hb_005834_030 Hb_005834_030 Hb_135585_010--Hb_005834_030 Hb_001105_080 Hb_001105_080 Hb_135585_010--Hb_001105_080 Hb_005396_140 Hb_005396_140 Hb_135585_010--Hb_005396_140 Hb_140618_010 Hb_140618_010 Hb_135585_010--Hb_140618_010 Hb_128524_010--Hb_028285_030 Hb_002245_040 Hb_002245_040 Hb_128524_010--Hb_002245_040 Hb_000792_120 Hb_000792_120 Hb_128524_010--Hb_000792_120 Hb_000453_300 Hb_000453_300 Hb_128524_010--Hb_000453_300 Hb_028285_030--Hb_002245_040 Hb_000120_360 Hb_000120_360 Hb_028285_030--Hb_000120_360 Hb_028285_030--Hb_000453_300 Hb_000387_060 Hb_000387_060 Hb_028285_030--Hb_000387_060 Hb_003050_070 Hb_003050_070 Hb_028285_030--Hb_003050_070 Hb_009038_010 Hb_009038_010 Hb_000001_120--Hb_009038_010 Hb_000001_120--Hb_002780_050 Hb_000001_120--Hb_028285_030 Hb_000001_120--Hb_005616_030 Hb_000001_120--Hb_000120_360 Hb_002780_050--Hb_005616_030 Hb_002780_050--Hb_028285_030 Hb_002780_050--Hb_128524_010 Hb_008864_060 Hb_008864_060 Hb_002780_050--Hb_008864_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
50.535 14.3659 9.76672 1.28737 0

CAGE analysis