Hb_015807_110

Information

Type -
Description -
Location Contig15807: 109599-110008
Sequence    

Annotation

kegg
ID rcu:RCOM_0181540
description Thioredoxin H-type, putative
nr
ID ACI00350.1
description thioredoxin h [Hevea brasiliensis]
swissprot
ID Q8LDI5
description Thioredoxin-like protein CXXS1 OS=Arabidopsis thaliana GN=CXXS1 PE=2 SV=2
trembl
ID B5TYT2
description Thioredoxin h OS=Hevea brasiliensis PE=2 SV=1
Gene Ontology
ID GO:0005829
description thioredoxin h

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_015807_110 0.0 - - thioredoxin h [Hevea brasiliensis]
2 Hb_100485_010 0.2622195643 - - PREDICTED: hippocampus abundant transcript-like protein 1 [Jatropha curcas]
3 Hb_006351_070 0.2899032216 - - heat-shock protein, putative [Ricinus communis]
4 Hb_053373_010 0.2996918123 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
5 Hb_009038_010 0.3008852148 - - latex cystatin [Hevea brasiliensis]
6 Hb_128524_010 0.3084868168 - - PREDICTED: polyadenylate-binding protein 7 isoform X1 [Jatropha curcas]
7 Hb_005615_060 0.3089024505 - - PREDICTED: uncharacterized protein LOC105636752 [Jatropha curcas]
8 Hb_141408_010 0.3106277338 - - PREDICTED: uncharacterized protein LOC105631382 [Jatropha curcas]
9 Hb_010174_010 0.3208166952 - - PREDICTED: protein terminal ear1 [Jatropha curcas]
10 Hb_135585_010 0.3218973714 - - -
11 Hb_000001_120 0.3227550203 - - hypothetical protein JCGZ_03063 [Jatropha curcas]
12 Hb_003144_050 0.3235047634 - - PREDICTED: WAT1-related protein At5g64700 [Jatropha curcas]
13 Hb_000083_190 0.3246632608 - - low affinity nitrate transporter, partial [Triticum aestivum]
14 Hb_031474_030 0.3252895756 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
15 Hb_000130_030 0.3254589916 - - PREDICTED: small ubiquitin-related modifier 2-A-like [Eucalyptus grandis]
16 Hb_002918_040 0.3279446225 transcription factor TF Family: SBP Squamosa promoter-binding protein, putative [Ricinus communis]
17 Hb_000120_360 0.3283471627 - - conserved hypothetical protein [Ricinus communis]
18 Hb_137268_010 0.3285415156 - - -
19 Hb_002245_040 0.3287383604 - - thioredoxin h [Hevea brasiliensis]
20 Hb_028285_030 0.3319286029 - - PREDICTED: protein GLUTAMINE DUMPER 1-like [Elaeis guineensis]

Gene co-expression network

sample Hb_015807_110 Hb_015807_110 Hb_100485_010 Hb_100485_010 Hb_015807_110--Hb_100485_010 Hb_006351_070 Hb_006351_070 Hb_015807_110--Hb_006351_070 Hb_053373_010 Hb_053373_010 Hb_015807_110--Hb_053373_010 Hb_009038_010 Hb_009038_010 Hb_015807_110--Hb_009038_010 Hb_128524_010 Hb_128524_010 Hb_015807_110--Hb_128524_010 Hb_005615_060 Hb_005615_060 Hb_015807_110--Hb_005615_060 Hb_003144_050 Hb_003144_050 Hb_100485_010--Hb_003144_050 Hb_002888_010 Hb_002888_010 Hb_100485_010--Hb_002888_010 Hb_111039_010 Hb_111039_010 Hb_100485_010--Hb_111039_010 Hb_148209_060 Hb_148209_060 Hb_100485_010--Hb_148209_060 Hb_088538_010 Hb_088538_010 Hb_100485_010--Hb_088538_010 Hb_011242_030 Hb_011242_030 Hb_006351_070--Hb_011242_030 Hb_001529_070 Hb_001529_070 Hb_006351_070--Hb_001529_070 Hb_000175_580 Hb_000175_580 Hb_006351_070--Hb_000175_580 Hb_001437_050 Hb_001437_050 Hb_006351_070--Hb_001437_050 Hb_002685_180 Hb_002685_180 Hb_006351_070--Hb_002685_180 Hb_000130_030 Hb_000130_030 Hb_053373_010--Hb_000130_030 Hb_135585_010 Hb_135585_010 Hb_053373_010--Hb_135585_010 Hb_053373_010--Hb_128524_010 Hb_028285_030 Hb_028285_030 Hb_053373_010--Hb_028285_030 Hb_000001_120 Hb_000001_120 Hb_053373_010--Hb_000001_120 Hb_002780_050 Hb_002780_050 Hb_053373_010--Hb_002780_050 Hb_009038_010--Hb_000001_120 Hb_009038_010--Hb_002780_050 Hb_009038_010--Hb_053373_010 Hb_009038_010--Hb_000130_030 Hb_005616_030 Hb_005616_030 Hb_009038_010--Hb_005616_030 Hb_001780_070 Hb_001780_070 Hb_009038_010--Hb_001780_070 Hb_128524_010--Hb_028285_030 Hb_002245_040 Hb_002245_040 Hb_128524_010--Hb_002245_040 Hb_000792_120 Hb_000792_120 Hb_128524_010--Hb_000792_120 Hb_128524_010--Hb_135585_010 Hb_000453_300 Hb_000453_300 Hb_128524_010--Hb_000453_300 Hb_065858_010 Hb_065858_010 Hb_005615_060--Hb_065858_010 Hb_001936_170 Hb_001936_170 Hb_005615_060--Hb_001936_170 Hb_000449_060 Hb_000449_060 Hb_005615_060--Hb_000449_060 Hb_031474_030 Hb_031474_030 Hb_005615_060--Hb_031474_030 Hb_011724_030 Hb_011724_030 Hb_005615_060--Hb_011724_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.241019 0.242982 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.03258 0.868246 0.568608 0 0.611321

CAGE analysis