Hb_027751_010

Information

Type -
Description -
Location Contig27751: 19-1051
Sequence    

Annotation

kegg
ID sly:104646181
description uncharacterized LOC104646181
nr
ID XP_012075160.1
description PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A061EU35
description Uncharacterized protein OS=Theobroma cacao GN=TCM_023328 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_027751_010 0.0 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
2 Hb_003487_010 0.2536192138 - - -
3 Hb_031474_030 0.2628134084 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
4 Hb_155403_010 0.278655721 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
5 Hb_180455_010 0.3048944657 - - PREDICTED: uncharacterized protein LOC105778857 [Gossypium raimondii]
6 Hb_153051_010 0.3124992448 - - -
7 Hb_108768_010 0.3155750009 - - PREDICTED: uncharacterized protein LOC104216022, partial [Nicotiana sylvestris]
8 Hb_000576_100 0.3169486286 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
9 Hb_003155_060 0.317059195 - - PREDICTED: uncharacterized protein LOC104105697 [Nicotiana tomentosiformis]
10 Hb_093543_010 0.3381874147 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
11 Hb_011724_030 0.3429460667 - - Organic cation transporter, putative [Ricinus communis]
12 Hb_008879_010 0.3452547997 - - Beta-ureidopropionase, putative [Ricinus communis]
13 Hb_002325_080 0.3572127822 - - -
14 Hb_012707_020 0.3573319267 - - -
15 Hb_041813_020 0.3611807847 - - ATP synthase epsilon subunit [Grubbia rosmarinifolia]
16 Hb_000261_300 0.3618582224 - - -
17 Hb_001595_060 0.3619460564 - - hypothetical protein L484_001429 [Morus notabilis]
18 Hb_006267_050 0.362091448 - - hypothetical protein B456_002G103400 [Gossypium raimondii]
19 Hb_011206_030 0.3636565008 - - PREDICTED: cytochrome b-c1 complex subunit Rieske-4, mitochondrial-like [Jatropha curcas]
20 Hb_048953_010 0.3636565008 - - PREDICTED: uncharacterized protein LOC105775428 [Gossypium raimondii]

Gene co-expression network

sample Hb_027751_010 Hb_027751_010 Hb_003487_010 Hb_003487_010 Hb_027751_010--Hb_003487_010 Hb_031474_030 Hb_031474_030 Hb_027751_010--Hb_031474_030 Hb_155403_010 Hb_155403_010 Hb_027751_010--Hb_155403_010 Hb_180455_010 Hb_180455_010 Hb_027751_010--Hb_180455_010 Hb_153051_010 Hb_153051_010 Hb_027751_010--Hb_153051_010 Hb_108768_010 Hb_108768_010 Hb_027751_010--Hb_108768_010 Hb_003155_060 Hb_003155_060 Hb_003487_010--Hb_003155_060 Hb_000576_100 Hb_000576_100 Hb_003487_010--Hb_000576_100 Hb_003487_010--Hb_108768_010 Hb_003487_010--Hb_155403_010 Hb_007749_030 Hb_007749_030 Hb_003487_010--Hb_007749_030 Hb_002536_020 Hb_002536_020 Hb_003487_010--Hb_002536_020 Hb_011724_030 Hb_011724_030 Hb_031474_030--Hb_011724_030 Hb_124621_010 Hb_124621_010 Hb_031474_030--Hb_124621_010 Hb_107221_010 Hb_107221_010 Hb_031474_030--Hb_107221_010 Hb_005615_060 Hb_005615_060 Hb_031474_030--Hb_005615_060 Hb_065858_010 Hb_065858_010 Hb_031474_030--Hb_065858_010 Hb_001386_030 Hb_001386_030 Hb_155403_010--Hb_001386_030 Hb_001123_020 Hb_001123_020 Hb_155403_010--Hb_001123_020 Hb_001195_700 Hb_001195_700 Hb_155403_010--Hb_001195_700 Hb_155403_010--Hb_003155_060 Hb_024446_010 Hb_024446_010 Hb_180455_010--Hb_024446_010 Hb_064445_030 Hb_064445_030 Hb_180455_010--Hb_064445_030 Hb_003828_010 Hb_003828_010 Hb_180455_010--Hb_003828_010 Hb_177166_010 Hb_177166_010 Hb_180455_010--Hb_177166_010 Hb_006094_010 Hb_006094_010 Hb_180455_010--Hb_006094_010 Hb_005781_010 Hb_005781_010 Hb_180455_010--Hb_005781_010 Hb_008879_010 Hb_008879_010 Hb_153051_010--Hb_008879_010 Hb_002325_080 Hb_002325_080 Hb_153051_010--Hb_002325_080 Hb_041813_020 Hb_041813_020 Hb_153051_010--Hb_041813_020 Hb_153051_010--Hb_180455_010 Hb_001595_060 Hb_001595_060 Hb_153051_010--Hb_001595_060 Hb_108768_010--Hb_000576_100 Hb_108768_010--Hb_003155_060 Hb_108768_010--Hb_007749_030 Hb_108768_010--Hb_002536_020 Hb_017687_010 Hb_017687_010 Hb_108768_010--Hb_017687_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.020809 0.0186953 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.114307 0 0 0.0181203 0.0912776

CAGE analysis