Hb_001123_020

Information

Type -
Description -
Location Contig1123: 9971-10655
Sequence    

Annotation

kegg
ID rcu:RCOM_1437490
description serine-threonine protein kinase, plant-type, putative (EC:1.3.1.74)
nr
ID XP_012088769.1
description PREDICTED: leucine-rich repeat receptor-like protein CLAVATA2 [Jatropha curcas]
swissprot
ID O80809
description Leucine-rich repeat receptor-like protein CLAVATA2 OS=Arabidopsis thaliana GN=CLV2 PE=1 SV=1
trembl
ID A0A067JUU0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23132 PE=4 SV=1
Gene Ontology
ID GO:0005515
description leucine-rich repeat receptor-like protein clavata2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03710: 9784-10096
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001123_020 0.0 - - PREDICTED: leucine-rich repeat receptor-like protein CLAVATA2 [Jatropha curcas]
2 Hb_121348_010 0.2220543023 - - -
3 Hb_155403_010 0.2757632257 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
4 Hb_001623_600 0.3300861522 - - PREDICTED: uncharacterized protein LOC104748784 [Camelina sativa]
5 Hb_000085_420 0.3629777824 - - conserved hypothetical protein [Ricinus communis]
6 Hb_024714_040 0.3636145746 - - PREDICTED: DNA mismatch repair protein PMS1 [Jatropha curcas]
7 Hb_003487_010 0.3641745636 - - -
8 Hb_001878_030 0.3742139177 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105126050 [Populus euphratica]
9 Hb_001386_030 0.3743898866 - - PREDICTED: peroxidase 55 [Jatropha curcas]
10 Hb_012090_020 0.3764634235 - - PREDICTED: probable beta-1,3-galactosyltransferase 2 [Jatropha curcas]
11 Hb_007594_110 0.3842601178 - - fructokinase [Manihot esculenta]
12 Hb_000935_020 0.3908870339 - - putative non-LTR retroelement reverse transcriptase [Arabidopsis thaliana]
13 Hb_000866_180 0.3994331593 - - PREDICTED: feruloyl CoA ortho-hydroxylase 2-like [Populus euphratica]
14 Hb_004918_010 0.4022022804 - - protein binding protein, putative [Ricinus communis]
15 Hb_156850_130 0.403385845 - - conserved hypothetical protein [Ricinus communis]
16 Hb_027751_010 0.4035545071 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
17 Hb_004689_040 0.4041534941 - - PREDICTED: uncharacterized protein LOC105648084 [Jatropha curcas]
18 Hb_002960_070 0.4059402976 - - -
19 Hb_134546_010 0.4063061489 - - PREDICTED: uncharacterized protein LOC105107372 [Populus euphratica]
20 Hb_100684_010 0.4095196374 - - hypothetical protein, partial [Pseudomonas fluorescens]

Gene co-expression network

sample Hb_001123_020 Hb_001123_020 Hb_121348_010 Hb_121348_010 Hb_001123_020--Hb_121348_010 Hb_155403_010 Hb_155403_010 Hb_001123_020--Hb_155403_010 Hb_001623_600 Hb_001623_600 Hb_001123_020--Hb_001623_600 Hb_000085_420 Hb_000085_420 Hb_001123_020--Hb_000085_420 Hb_024714_040 Hb_024714_040 Hb_001123_020--Hb_024714_040 Hb_003487_010 Hb_003487_010 Hb_001123_020--Hb_003487_010 Hb_004918_010 Hb_004918_010 Hb_121348_010--Hb_004918_010 Hb_000866_180 Hb_000866_180 Hb_121348_010--Hb_000866_180 Hb_007100_020 Hb_007100_020 Hb_121348_010--Hb_007100_020 Hb_121348_010--Hb_155403_010 Hb_014361_030 Hb_014361_030 Hb_121348_010--Hb_014361_030 Hb_155403_010--Hb_003487_010 Hb_001386_030 Hb_001386_030 Hb_155403_010--Hb_001386_030 Hb_001195_700 Hb_001195_700 Hb_155403_010--Hb_001195_700 Hb_027751_010 Hb_027751_010 Hb_155403_010--Hb_027751_010 Hb_003155_060 Hb_003155_060 Hb_155403_010--Hb_003155_060 Hb_000445_200 Hb_000445_200 Hb_001623_600--Hb_000445_200 Hb_057207_010 Hb_057207_010 Hb_001623_600--Hb_057207_010 Hb_000387_090 Hb_000387_090 Hb_001623_600--Hb_000387_090 Hb_104721_010 Hb_104721_010 Hb_001623_600--Hb_104721_010 Hb_001623_600--Hb_003487_010 Hb_002874_040 Hb_002874_040 Hb_001623_600--Hb_002874_040 Hb_002960_070 Hb_002960_070 Hb_000085_420--Hb_002960_070 Hb_000649_260 Hb_000649_260 Hb_000085_420--Hb_000649_260 Hb_003159_070 Hb_003159_070 Hb_000085_420--Hb_003159_070 Hb_156850_130 Hb_156850_130 Hb_000085_420--Hb_156850_130 Hb_006449_060 Hb_006449_060 Hb_000085_420--Hb_006449_060 Hb_010532_010 Hb_010532_010 Hb_000085_420--Hb_010532_010 Hb_006538_180 Hb_006538_180 Hb_024714_040--Hb_006538_180 Hb_006916_180 Hb_006916_180 Hb_024714_040--Hb_006916_180 Hb_000613_260 Hb_000613_260 Hb_024714_040--Hb_000613_260 Hb_001390_020 Hb_001390_020 Hb_024714_040--Hb_001390_020 Hb_138229_010 Hb_138229_010 Hb_024714_040--Hb_138229_010 Hb_000987_160 Hb_000987_160 Hb_024714_040--Hb_000987_160 Hb_003487_010--Hb_003155_060 Hb_000576_100 Hb_000576_100 Hb_003487_010--Hb_000576_100 Hb_108768_010 Hb_108768_010 Hb_003487_010--Hb_108768_010 Hb_007749_030 Hb_007749_030 Hb_003487_010--Hb_007749_030 Hb_002536_020 Hb_002536_020 Hb_003487_010--Hb_002536_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0654179 0 0.123047 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.119656 0 0 0.0776956 0.178402

CAGE analysis