Hb_156850_130

Information

Type -
Description -
Location Contig156850: 84826-85541
Sequence    

Annotation

kegg
ID rcu:RCOM_1687250
description hypothetical protein
nr
ID XP_002509827.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RCE3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1687250 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_156850_130 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002960_070 0.0947722014 - - -
3 Hb_108557_020 0.2358054563 transcription factor TF Family: B3 Zeamatin precursor, putative [Ricinus communis]
4 Hb_002400_080 0.2358924764 - - PREDICTED: uncharacterized protein LOC104106381 [Nicotiana tomentosiformis]
5 Hb_003417_070 0.2398621293 - - hypothetical protein MIMGU_mgv1a018902mg [Erythranthe guttata]
6 Hb_032260_110 0.2749949098 - - conserved hypothetical protein [Ricinus communis]
7 Hb_012090_020 0.2800696494 - - PREDICTED: probable beta-1,3-galactosyltransferase 2 [Jatropha curcas]
8 Hb_000085_420 0.2801075907 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001497_040 0.2844426779 - - hypothetical protein POPTR_0008s219701g, partial [Populus trichocarpa]
10 Hb_001711_040 0.2844682386 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000826_080 0.3142858243 - - -
12 Hb_002276_030 0.3151583007 - - PREDICTED: putative U-box domain-containing protein 42 [Jatropha curcas]
13 Hb_004208_010 0.3171244995 - - PREDICTED: uncharacterized protein LOC105914588 [Setaria italica]
14 Hb_000856_120 0.317415178 transcription factor TF Family: LOB PREDICTED: myb-like protein M [Pyrus x bretschneideri]
15 Hb_000487_190 0.3179504854 - - -
16 Hb_001244_050 0.3186200671 - - PREDICTED: uncharacterized protein LOC105643334 [Jatropha curcas]
17 Hb_002798_080 0.3194439651 - - hypothetical protein VITISV_043745 [Vitis vinifera]
18 Hb_081703_020 0.3258964833 - - -
19 Hb_032733_020 0.3314641372 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180-like isoform X4 [Citrus sinensis]
20 Hb_001671_090 0.3323231078 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]

Gene co-expression network

sample Hb_156850_130 Hb_156850_130 Hb_002960_070 Hb_002960_070 Hb_156850_130--Hb_002960_070 Hb_108557_020 Hb_108557_020 Hb_156850_130--Hb_108557_020 Hb_002400_080 Hb_002400_080 Hb_156850_130--Hb_002400_080 Hb_003417_070 Hb_003417_070 Hb_156850_130--Hb_003417_070 Hb_032260_110 Hb_032260_110 Hb_156850_130--Hb_032260_110 Hb_012090_020 Hb_012090_020 Hb_156850_130--Hb_012090_020 Hb_000085_420 Hb_000085_420 Hb_002960_070--Hb_000085_420 Hb_002960_070--Hb_003417_070 Hb_002960_070--Hb_108557_020 Hb_002960_070--Hb_002400_080 Hb_004724_050 Hb_004724_050 Hb_002960_070--Hb_004724_050 Hb_108557_020--Hb_002400_080 Hb_001711_040 Hb_001711_040 Hb_108557_020--Hb_001711_040 Hb_001840_110 Hb_001840_110 Hb_108557_020--Hb_001840_110 Hb_005831_010 Hb_005831_010 Hb_108557_020--Hb_005831_010 Hb_001497_040 Hb_001497_040 Hb_002400_080--Hb_001497_040 Hb_002276_030 Hb_002276_030 Hb_002400_080--Hb_002276_030 Hb_000500_360 Hb_000500_360 Hb_002400_080--Hb_000500_360 Hb_001244_050 Hb_001244_050 Hb_002400_080--Hb_001244_050 Hb_002845_020 Hb_002845_020 Hb_002400_080--Hb_002845_020 Hb_000049_170 Hb_000049_170 Hb_002400_080--Hb_000049_170 Hb_081703_020 Hb_081703_020 Hb_003417_070--Hb_081703_020 Hb_008783_010 Hb_008783_010 Hb_003417_070--Hb_008783_010 Hb_008408_050 Hb_008408_050 Hb_003417_070--Hb_008408_050 Hb_153636_010 Hb_153636_010 Hb_003417_070--Hb_153636_010 Hb_032260_110--Hb_001497_040 Hb_114271_010 Hb_114271_010 Hb_032260_110--Hb_114271_010 Hb_000215_230 Hb_000215_230 Hb_032260_110--Hb_000215_230 Hb_003786_010 Hb_003786_010 Hb_032260_110--Hb_003786_010 Hb_002798_080 Hb_002798_080 Hb_032260_110--Hb_002798_080 Hb_004208_010 Hb_004208_010 Hb_032260_110--Hb_004208_010 Hb_122028_010 Hb_122028_010 Hb_012090_020--Hb_122028_010 Hb_001390_080 Hb_001390_080 Hb_012090_020--Hb_001390_080 Hb_000628_010 Hb_000628_010 Hb_012090_020--Hb_000628_010 Hb_008643_050 Hb_008643_050 Hb_012090_020--Hb_008643_050 Hb_134546_010 Hb_134546_010 Hb_012090_020--Hb_134546_010 Hb_031866_030 Hb_031866_030 Hb_012090_020--Hb_031866_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0895757 0.0458866 0.104581 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0671648 0.157758

CAGE analysis