Hb_002960_070

Information

Type -
Description -
Location Contig2960: 60386-61127
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30946: 48642-60400
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002960_070 0.0 - - -
2 Hb_156850_130 0.0947722014 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000085_420 0.2539545941 - - conserved hypothetical protein [Ricinus communis]
4 Hb_003417_070 0.2567829225 - - hypothetical protein MIMGU_mgv1a018902mg [Erythranthe guttata]
5 Hb_108557_020 0.2627500817 transcription factor TF Family: B3 Zeamatin precursor, putative [Ricinus communis]
6 Hb_002400_080 0.2908804744 - - PREDICTED: uncharacterized protein LOC104106381 [Nicotiana tomentosiformis]
7 Hb_004724_050 0.303224749 transcription factor TF Family: bZIP conserved hypothetical protein [Ricinus communis]
8 Hb_012090_020 0.3144182427 - - PREDICTED: probable beta-1,3-galactosyltransferase 2 [Jatropha curcas]
9 Hb_032260_110 0.3229770673 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000245_170 0.3266479062 - - ankyrin repeat-containing protein, putative [Ricinus communis]
11 Hb_081703_020 0.3370245278 - - -
12 Hb_001497_040 0.3378813402 - - hypothetical protein POPTR_0008s219701g, partial [Populus trichocarpa]
13 Hb_000487_190 0.3395010266 - - -
14 Hb_001244_050 0.3507449596 - - PREDICTED: uncharacterized protein LOC105643334 [Jatropha curcas]
15 Hb_008408_050 0.3509367104 - - -
16 Hb_005539_230 0.3510704086 - - hypothetical protein L484_027799 [Morus notabilis]
17 Hb_001386_150 0.3512139578 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
18 Hb_001711_040 0.3576189843 - - conserved hypothetical protein [Ricinus communis]
19 Hb_134546_010 0.3583713714 - - PREDICTED: uncharacterized protein LOC105107372 [Populus euphratica]
20 Hb_004208_010 0.3625157075 - - PREDICTED: uncharacterized protein LOC105914588 [Setaria italica]

Gene co-expression network

sample Hb_002960_070 Hb_002960_070 Hb_156850_130 Hb_156850_130 Hb_002960_070--Hb_156850_130 Hb_000085_420 Hb_000085_420 Hb_002960_070--Hb_000085_420 Hb_003417_070 Hb_003417_070 Hb_002960_070--Hb_003417_070 Hb_108557_020 Hb_108557_020 Hb_002960_070--Hb_108557_020 Hb_002400_080 Hb_002400_080 Hb_002960_070--Hb_002400_080 Hb_004724_050 Hb_004724_050 Hb_002960_070--Hb_004724_050 Hb_156850_130--Hb_108557_020 Hb_156850_130--Hb_002400_080 Hb_156850_130--Hb_003417_070 Hb_032260_110 Hb_032260_110 Hb_156850_130--Hb_032260_110 Hb_012090_020 Hb_012090_020 Hb_156850_130--Hb_012090_020 Hb_000649_260 Hb_000649_260 Hb_000085_420--Hb_000649_260 Hb_003159_070 Hb_003159_070 Hb_000085_420--Hb_003159_070 Hb_000085_420--Hb_156850_130 Hb_006449_060 Hb_006449_060 Hb_000085_420--Hb_006449_060 Hb_010532_010 Hb_010532_010 Hb_000085_420--Hb_010532_010 Hb_081703_020 Hb_081703_020 Hb_003417_070--Hb_081703_020 Hb_008783_010 Hb_008783_010 Hb_003417_070--Hb_008783_010 Hb_008408_050 Hb_008408_050 Hb_003417_070--Hb_008408_050 Hb_153636_010 Hb_153636_010 Hb_003417_070--Hb_153636_010 Hb_108557_020--Hb_002400_080 Hb_001711_040 Hb_001711_040 Hb_108557_020--Hb_001711_040 Hb_001840_110 Hb_001840_110 Hb_108557_020--Hb_001840_110 Hb_005831_010 Hb_005831_010 Hb_108557_020--Hb_005831_010 Hb_001497_040 Hb_001497_040 Hb_002400_080--Hb_001497_040 Hb_002276_030 Hb_002276_030 Hb_002400_080--Hb_002276_030 Hb_000500_360 Hb_000500_360 Hb_002400_080--Hb_000500_360 Hb_001244_050 Hb_001244_050 Hb_002400_080--Hb_001244_050 Hb_002845_020 Hb_002845_020 Hb_002400_080--Hb_002845_020 Hb_000049_170 Hb_000049_170 Hb_002400_080--Hb_000049_170 Hb_001797_030 Hb_001797_030 Hb_004724_050--Hb_001797_030 Hb_000049_220 Hb_000049_220 Hb_004724_050--Hb_000049_220 Hb_003228_090 Hb_003228_090 Hb_004724_050--Hb_003228_090 Hb_000245_170 Hb_000245_170 Hb_004724_050--Hb_000245_170 Hb_134546_010 Hb_134546_010 Hb_004724_050--Hb_134546_010 Hb_000608_330 Hb_000608_330 Hb_004724_050--Hb_000608_330
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.285511 0.0842874 0.314011 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.154558 0.30531

CAGE analysis