Hb_003417_070

Information

Type -
Description -
Location Contig3417: 78488-89776
Sequence    

Annotation

kegg
ID sbi:SORBI_0019s004860
description SORBIDRAFT_0019s004860, Sb0019s004860; hypothetical protein
nr
ID EYU18275.1
description hypothetical protein MIMGU_mgv1a018902mg [Erythranthe guttata]
swissprot
ID -
description -
trembl
ID A0A022PVK1
description Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a018902mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003417_070 0.0 - - hypothetical protein MIMGU_mgv1a018902mg [Erythranthe guttata]
2 Hb_081703_020 0.2051414745 - - -
3 Hb_156850_130 0.2398621293 - - conserved hypothetical protein [Ricinus communis]
4 Hb_002960_070 0.2567829225 - - -
5 Hb_008783_010 0.2723106484 - - -
6 Hb_008408_050 0.2846274789 - - -
7 Hb_153636_010 0.303667367 - - PREDICTED: receptor-like protein kinase [Jatropha curcas]
8 Hb_015076_020 0.3080032442 - - IMP dehydrogenase/GMP reductase [Hevea brasiliensis]
9 Hb_038508_010 0.3087057257 - - PREDICTED: uncharacterized protein LOC105638675 [Jatropha curcas]
10 Hb_000155_240 0.3111042256 - - PREDICTED: uncharacterized protein LOC104888642 [Beta vulgaris subsp. vulgaris]
11 Hb_000789_140 0.3189709543 - - PREDICTED: uncharacterized protein LOC105650390, partial [Jatropha curcas]
12 Hb_012090_020 0.323517084 - - PREDICTED: probable beta-1,3-galactosyltransferase 2 [Jatropha curcas]
13 Hb_000505_120 0.3303216014 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
14 Hb_146617_010 0.3342896587 - - PREDICTED: uncharacterized protein LOC105796032 [Gossypium raimondii]
15 Hb_015778_020 0.3347908066 - - Putative methyltransferase family protein [Solanum demissum]
16 Hb_010452_010 0.3378777077 - - PREDICTED: uncharacterized protein LOC104232369 [Nicotiana sylvestris]
17 Hb_000089_050 0.3404356866 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
18 Hb_003228_090 0.3505920689 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105637258 [Jatropha curcas]
19 Hb_032634_010 0.3534216824 - - PREDICTED: uncharacterized protein LOC104216022, partial [Nicotiana sylvestris]
20 Hb_032260_110 0.3538276373 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_003417_070 Hb_003417_070 Hb_081703_020 Hb_081703_020 Hb_003417_070--Hb_081703_020 Hb_156850_130 Hb_156850_130 Hb_003417_070--Hb_156850_130 Hb_002960_070 Hb_002960_070 Hb_003417_070--Hb_002960_070 Hb_008783_010 Hb_008783_010 Hb_003417_070--Hb_008783_010 Hb_008408_050 Hb_008408_050 Hb_003417_070--Hb_008408_050 Hb_153636_010 Hb_153636_010 Hb_003417_070--Hb_153636_010 Hb_081703_020--Hb_153636_010 Hb_015778_020 Hb_015778_020 Hb_081703_020--Hb_015778_020 Hb_010452_010 Hb_010452_010 Hb_081703_020--Hb_010452_010 Hb_003228_090 Hb_003228_090 Hb_081703_020--Hb_003228_090 Hb_032634_010 Hb_032634_010 Hb_081703_020--Hb_032634_010 Hb_156850_130--Hb_002960_070 Hb_108557_020 Hb_108557_020 Hb_156850_130--Hb_108557_020 Hb_002400_080 Hb_002400_080 Hb_156850_130--Hb_002400_080 Hb_032260_110 Hb_032260_110 Hb_156850_130--Hb_032260_110 Hb_012090_020 Hb_012090_020 Hb_156850_130--Hb_012090_020 Hb_000085_420 Hb_000085_420 Hb_002960_070--Hb_000085_420 Hb_002960_070--Hb_108557_020 Hb_002960_070--Hb_002400_080 Hb_004724_050 Hb_004724_050 Hb_002960_070--Hb_004724_050 Hb_000505_120 Hb_000505_120 Hb_008783_010--Hb_000505_120 Hb_015076_020 Hb_015076_020 Hb_008783_010--Hb_015076_020 Hb_011280_020 Hb_011280_020 Hb_008783_010--Hb_011280_020 Hb_097006_010 Hb_097006_010 Hb_008783_010--Hb_097006_010 Hb_010164_040 Hb_010164_040 Hb_008783_010--Hb_010164_040 Hb_004241_030 Hb_004241_030 Hb_008783_010--Hb_004241_030 Hb_008408_050--Hb_153636_010 Hb_001579_210 Hb_001579_210 Hb_008408_050--Hb_001579_210 Hb_008408_050--Hb_003228_090 Hb_075722_010 Hb_075722_010 Hb_008408_050--Hb_075722_010 Hb_008408_050--Hb_012090_020 Hb_153636_010--Hb_003228_090 Hb_008643_050 Hb_008643_050 Hb_153636_010--Hb_008643_050 Hb_001390_080 Hb_001390_080 Hb_153636_010--Hb_001390_080 Hb_000628_010 Hb_000628_010 Hb_153636_010--Hb_000628_010 Hb_016354_010 Hb_016354_010 Hb_153636_010--Hb_016354_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0430887 0.011493 0.00906313 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00825047 0.043572

CAGE analysis