Hb_108557_020

Information

Type transcription factor
Description TF Family: B3
Location Contig108557: 12101-19858
Sequence    

Annotation

kegg
ID rcu:RCOM_1598220
description Zeamatin precursor, putative
nr
ID XP_002510548.1
description Zeamatin precursor, putative [Ricinus communis]
swissprot
ID P83332
description Thaumatin-like protein 1 OS=Prunus persica PE=2 SV=1
trembl
ID B9R8A5
description Zeamatin, putative OS=Ricinus communis GN=RCOM_1598220 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_108557_020 0.0 transcription factor TF Family: B3 Zeamatin precursor, putative [Ricinus communis]
2 Hb_156850_130 0.2358054563 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002400_080 0.2562440989 - - PREDICTED: uncharacterized protein LOC104106381 [Nicotiana tomentosiformis]
4 Hb_001711_040 0.2587405491 - - conserved hypothetical protein [Ricinus communis]
5 Hb_002960_070 0.2627500817 - - -
6 Hb_001840_110 0.2652007596 - - hypothetical protein JCGZ_20198 [Jatropha curcas]
7 Hb_005831_010 0.2758487339 - - hypothetical protein JCGZ_04003 [Jatropha curcas]
8 Hb_001195_140 0.2770619165 - - PREDICTED: U-box domain-containing protein 5-like [Jatropha curcas]
9 Hb_000117_140 0.2771562217 - - hypothetical protein CISIN_1g042884mg, partial [Citrus sinensis]
10 Hb_000856_120 0.2781522825 transcription factor TF Family: LOB PREDICTED: myb-like protein M [Pyrus x bretschneideri]
11 Hb_011038_020 0.2785523442 - - conserved hypothetical protein [Ricinus communis]
12 Hb_002154_080 0.2790576192 - - hypothetical protein MIMGU_mgv1a018017mg, partial [Erythranthe guttata]
13 Hb_136546_010 0.2809854399 - - PREDICTED: wall-associated receptor kinase-like 1, partial [Populus euphratica]
14 Hb_057321_010 0.2823159822 - - receptor serine/threonine kinase, putative [Ricinus communis]
15 Hb_001427_220 0.2854400351 - - hypothetical protein CISIN_1g033375mg [Citrus sinensis]
16 Hb_001244_050 0.2860383317 - - PREDICTED: uncharacterized protein LOC105643334 [Jatropha curcas]
17 Hb_168509_020 0.2867752354 - - macrophage migration inhibitory factor family protein [Populus trichocarpa]
18 Hb_005999_010 0.2889339232 - - Sugar transporter ERD6-like 5 [Morus notabilis]
19 Hb_101034_020 0.2894420612 - - hypothetical protein JCGZ_13470 [Jatropha curcas]
20 Hb_001538_040 0.2954148233 - - PREDICTED: uncharacterized protein LOC104228304 [Nicotiana sylvestris]

Gene co-expression network

sample Hb_108557_020 Hb_108557_020 Hb_156850_130 Hb_156850_130 Hb_108557_020--Hb_156850_130 Hb_002400_080 Hb_002400_080 Hb_108557_020--Hb_002400_080 Hb_001711_040 Hb_001711_040 Hb_108557_020--Hb_001711_040 Hb_002960_070 Hb_002960_070 Hb_108557_020--Hb_002960_070 Hb_001840_110 Hb_001840_110 Hb_108557_020--Hb_001840_110 Hb_005831_010 Hb_005831_010 Hb_108557_020--Hb_005831_010 Hb_156850_130--Hb_002960_070 Hb_156850_130--Hb_002400_080 Hb_003417_070 Hb_003417_070 Hb_156850_130--Hb_003417_070 Hb_032260_110 Hb_032260_110 Hb_156850_130--Hb_032260_110 Hb_012090_020 Hb_012090_020 Hb_156850_130--Hb_012090_020 Hb_001497_040 Hb_001497_040 Hb_002400_080--Hb_001497_040 Hb_002276_030 Hb_002276_030 Hb_002400_080--Hb_002276_030 Hb_000500_360 Hb_000500_360 Hb_002400_080--Hb_000500_360 Hb_001244_050 Hb_001244_050 Hb_002400_080--Hb_001244_050 Hb_002845_020 Hb_002845_020 Hb_002400_080--Hb_002845_020 Hb_000049_170 Hb_000049_170 Hb_002400_080--Hb_000049_170 Hb_000856_120 Hb_000856_120 Hb_001711_040--Hb_000856_120 Hb_005765_020 Hb_005765_020 Hb_001711_040--Hb_005765_020 Hb_001863_410 Hb_001863_410 Hb_001711_040--Hb_001863_410 Hb_000028_270 Hb_000028_270 Hb_001711_040--Hb_000028_270 Hb_000832_010 Hb_000832_010 Hb_001711_040--Hb_000832_010 Hb_058095_030 Hb_058095_030 Hb_001711_040--Hb_058095_030 Hb_000085_420 Hb_000085_420 Hb_002960_070--Hb_000085_420 Hb_002960_070--Hb_003417_070 Hb_002960_070--Hb_002400_080 Hb_004724_050 Hb_004724_050 Hb_002960_070--Hb_004724_050 Hb_001195_140 Hb_001195_140 Hb_001840_110--Hb_001195_140 Hb_004096_220 Hb_004096_220 Hb_001840_110--Hb_004096_220 Hb_083078_010 Hb_083078_010 Hb_001840_110--Hb_083078_010 Hb_004064_060 Hb_004064_060 Hb_001840_110--Hb_004064_060 Hb_073973_020 Hb_073973_020 Hb_001840_110--Hb_073973_020 Hb_000008_430 Hb_000008_430 Hb_001840_110--Hb_000008_430 Hb_005614_030 Hb_005614_030 Hb_005831_010--Hb_005614_030 Hb_023547_020 Hb_023547_020 Hb_005831_010--Hb_023547_020 Hb_001538_040 Hb_001538_040 Hb_005831_010--Hb_001538_040 Hb_005436_030 Hb_005436_030 Hb_005831_010--Hb_005436_030 Hb_003050_010 Hb_003050_010 Hb_005831_010--Hb_003050_010 Hb_000987_160 Hb_000987_160 Hb_005831_010--Hb_000987_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0475254 0.094624 0.156132 0 0.0158778 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.125059 0.118274

CAGE analysis