Hb_000085_420

Information

Type -
Description -
Location Contig85: 404208-404435
Sequence    

Annotation

kegg
ID rcu:RCOM_0174760
description hypothetical protein
nr
ID XP_002527491.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SNC2
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0174760 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60392: 404201-404643
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000085_420 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002960_070 0.2539545941 - - -
3 Hb_000649_260 0.2636421616 - - uncharacterized LOC105634108 [Jatropha curcas]
4 Hb_003159_070 0.2751546612 - - Uncharacterized protein TCM_035723 [Theobroma cacao]
5 Hb_156850_130 0.2801075907 - - conserved hypothetical protein [Ricinus communis]
6 Hb_006449_060 0.2868100192 - - PREDICTED: uncharacterized protein LOC104106381 [Nicotiana tomentosiformis]
7 Hb_010532_010 0.2874476635 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 isoform X1 [Populus euphratica]
8 Hb_134546_010 0.2881633282 - - PREDICTED: uncharacterized protein LOC105107372 [Populus euphratica]
9 Hb_005207_010 0.2933964485 - - PREDICTED: zinc finger Ran-binding domain-containing protein 2-like [Jatropha curcas]
10 Hb_002233_050 0.2998122711 - - PREDICTED: uncharacterized protein LOC104879391 [Vitis vinifera]
11 Hb_005622_030 0.3028866066 - - transferase, putative [Ricinus communis]
12 Hb_177772_010 0.3043498482 - - PREDICTED: receptor-like protein 12 isoform X2 [Vitis vinifera]
13 Hb_012090_020 0.3073466056 - - PREDICTED: probable beta-1,3-galactosyltransferase 2 [Jatropha curcas]
14 Hb_152180_010 0.3155720208 - - Blue copper protein precursor, putative [Ricinus communis]
15 Hb_002400_080 0.3213428166 - - PREDICTED: uncharacterized protein LOC104106381 [Nicotiana tomentosiformis]
16 Hb_010678_010 0.3219335297 - - PREDICTED: alpha-glucosidase-like [Jatropha curcas]
17 Hb_014658_010 0.3293341254 - - Chain A, Anomalous Substructure Of Hydroxynitrile Lyase
18 Hb_166210_010 0.3344685243 - - conserved hypothetical protein [Ricinus communis]
19 Hb_138229_010 0.3350173372 - - hypothetical protein JCGZ_05736 [Jatropha curcas]
20 Hb_108557_020 0.3360852125 transcription factor TF Family: B3 Zeamatin precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_000085_420 Hb_000085_420 Hb_002960_070 Hb_002960_070 Hb_000085_420--Hb_002960_070 Hb_000649_260 Hb_000649_260 Hb_000085_420--Hb_000649_260 Hb_003159_070 Hb_003159_070 Hb_000085_420--Hb_003159_070 Hb_156850_130 Hb_156850_130 Hb_000085_420--Hb_156850_130 Hb_006449_060 Hb_006449_060 Hb_000085_420--Hb_006449_060 Hb_010532_010 Hb_010532_010 Hb_000085_420--Hb_010532_010 Hb_002960_070--Hb_156850_130 Hb_003417_070 Hb_003417_070 Hb_002960_070--Hb_003417_070 Hb_108557_020 Hb_108557_020 Hb_002960_070--Hb_108557_020 Hb_002400_080 Hb_002400_080 Hb_002960_070--Hb_002400_080 Hb_004724_050 Hb_004724_050 Hb_002960_070--Hb_004724_050 Hb_000649_260--Hb_006449_060 Hb_000649_260--Hb_010532_010 Hb_000649_260--Hb_003159_070 Hb_005207_010 Hb_005207_010 Hb_000649_260--Hb_005207_010 Hb_002233_050 Hb_002233_050 Hb_000649_260--Hb_002233_050 Hb_177772_010 Hb_177772_010 Hb_000649_260--Hb_177772_010 Hb_003159_070--Hb_177772_010 Hb_003159_070--Hb_005207_010 Hb_003159_070--Hb_002233_050 Hb_003057_030 Hb_003057_030 Hb_003159_070--Hb_003057_030 Hb_029510_080 Hb_029510_080 Hb_003159_070--Hb_029510_080 Hb_156850_130--Hb_108557_020 Hb_156850_130--Hb_002400_080 Hb_156850_130--Hb_003417_070 Hb_032260_110 Hb_032260_110 Hb_156850_130--Hb_032260_110 Hb_012090_020 Hb_012090_020 Hb_156850_130--Hb_012090_020 Hb_006449_060--Hb_010532_010 Hb_006449_060--Hb_002233_050 Hb_018746_010 Hb_018746_010 Hb_006449_060--Hb_018746_010 Hb_006449_060--Hb_005207_010 Hb_001514_140 Hb_001514_140 Hb_006449_060--Hb_001514_140 Hb_010532_010--Hb_002233_050 Hb_010532_010--Hb_018746_010 Hb_010532_010--Hb_001514_140 Hb_010532_010--Hb_005207_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.410067 0 1.28243 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.643687 0.861083

CAGE analysis