Hb_001579_210

Information

Type -
Description -
Location Contig1579: 134130-137746
Sequence    

Annotation

kegg
ID rcu:RCOM_0528040
description hypothetical protein
nr
ID XP_002525367.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SH98
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0528040 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13829: 130484-133681
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001579_210 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_008408_050 0.2380874405 - - -
3 Hb_000920_090 0.2450130899 - - PREDICTED: LOW QUALITY PROTEIN: vinorine synthase-like [Jatropha curcas]
4 Hb_153636_010 0.2523494427 - - PREDICTED: receptor-like protein kinase [Jatropha curcas]
5 Hb_003228_090 0.2965812914 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105637258 [Jatropha curcas]
6 Hb_012049_030 0.3302300915 - - RNA polymerase beta subunit [Hevea brasiliensis]
7 Hb_000351_150 0.3309033218 - - Wall-associated kinase 2, putative [Theobroma cacao]
8 Hb_056550_010 0.3345364257 - - PREDICTED: uncharacterized protein LOC104112577 [Nicotiana tomentosiformis]
9 Hb_002836_040 0.3392201087 - - Auxin-induced protein 5NG4 [Glycine soja]
10 Hb_004738_060 0.342906886 - - predicted protein [Arabidopsis lyrata subsp. lyrata]
11 Hb_012235_010 0.3535336646 - - PREDICTED: uncharacterized protein LOC104094989 [Nicotiana tomentosiformis]
12 Hb_002253_090 0.3548075288 - - Chitinase 1 precursor, putative [Ricinus communis]
13 Hb_001390_080 0.3548932703 - - structural constituent of cell wall, putative [Ricinus communis]
14 Hb_008643_050 0.3557701311 - - PREDICTED: uncharacterized protein LOC105160092 [Sesamum indicum]
15 Hb_016354_010 0.3577445494 - - -
16 Hb_000628_010 0.3578485825 - - PREDICTED: uncharacterized protein LOC105795966 [Gossypium raimondii]
17 Hb_000059_120 0.3582458586 - - JHL22C18.10 [Jatropha curcas]
18 Hb_079902_030 0.3616902354 - - conserved hypothetical protein [Ricinus communis]
19 Hb_081703_020 0.3642260128 - - -
20 Hb_053422_010 0.3685564046 - - PREDICTED: uncharacterized protein LOC105641005 [Jatropha curcas]

Gene co-expression network

sample Hb_001579_210 Hb_001579_210 Hb_008408_050 Hb_008408_050 Hb_001579_210--Hb_008408_050 Hb_000920_090 Hb_000920_090 Hb_001579_210--Hb_000920_090 Hb_153636_010 Hb_153636_010 Hb_001579_210--Hb_153636_010 Hb_003228_090 Hb_003228_090 Hb_001579_210--Hb_003228_090 Hb_012049_030 Hb_012049_030 Hb_001579_210--Hb_012049_030 Hb_000351_150 Hb_000351_150 Hb_001579_210--Hb_000351_150 Hb_008408_050--Hb_153636_010 Hb_008408_050--Hb_003228_090 Hb_075722_010 Hb_075722_010 Hb_008408_050--Hb_075722_010 Hb_003417_070 Hb_003417_070 Hb_008408_050--Hb_003417_070 Hb_012090_020 Hb_012090_020 Hb_008408_050--Hb_012090_020 Hb_000920_090--Hb_012049_030 Hb_004713_020 Hb_004713_020 Hb_000920_090--Hb_004713_020 Hb_000200_080 Hb_000200_080 Hb_000920_090--Hb_000200_080 Hb_007810_070 Hb_007810_070 Hb_000920_090--Hb_007810_070 Hb_000237_210 Hb_000237_210 Hb_000920_090--Hb_000237_210 Hb_153636_010--Hb_003228_090 Hb_008643_050 Hb_008643_050 Hb_153636_010--Hb_008643_050 Hb_001390_080 Hb_001390_080 Hb_153636_010--Hb_001390_080 Hb_000628_010 Hb_000628_010 Hb_153636_010--Hb_000628_010 Hb_016354_010 Hb_016354_010 Hb_153636_010--Hb_016354_010 Hb_000608_330 Hb_000608_330 Hb_003228_090--Hb_000608_330 Hb_003228_090--Hb_001390_080 Hb_003228_090--Hb_000628_010 Hb_003228_090--Hb_008643_050 Hb_000627_010 Hb_000627_010 Hb_003228_090--Hb_000627_010 Hb_000275_100 Hb_000275_100 Hb_012049_030--Hb_000275_100 Hb_189208_030 Hb_189208_030 Hb_012049_030--Hb_189208_030 Hb_012049_030--Hb_004713_020 Hb_003333_040 Hb_003333_040 Hb_012049_030--Hb_003333_040 Hb_004393_040 Hb_004393_040 Hb_012049_030--Hb_004393_040 Hb_007413_030 Hb_007413_030 Hb_012049_030--Hb_007413_030 Hb_056550_010 Hb_056550_010 Hb_000351_150--Hb_056550_010 Hb_087426_010 Hb_087426_010 Hb_000351_150--Hb_087426_010 Hb_004018_010 Hb_004018_010 Hb_000351_150--Hb_004018_010 Hb_000709_020 Hb_000709_020 Hb_000351_150--Hb_000709_020 Hb_000351_150--Hb_075722_010 Hb_163663_010 Hb_163663_010 Hb_000351_150--Hb_163663_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.132308 0 0.0362204 0.0233207 0 0.013713
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.116686

CAGE analysis