Hb_000200_080

Information

Type -
Description -
Location Contig200: 108720-112355
Sequence    

Annotation

kegg
ID vvi:104877459
description uncharacterized LOC104877459
nr
ID XP_010644016.1
description PREDICTED: uncharacterized protein LOC104877459 [Vitis vinifera]
swissprot
ID P14381
description Transposon TX1 uncharacterized 149 kDa protein OS=Xenopus laevis PE=3 SV=1
trembl
ID A5BH98
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_005356 PE=4 SV=1
Gene Ontology
ID GO:0097159
description retrotransposon unclassified

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000200_080 0.0 - - PREDICTED: uncharacterized protein LOC104877459 [Vitis vinifera]
2 Hb_004713_020 0.2593865105 - - -
3 Hb_005379_010 0.2593954182 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
4 Hb_074822_010 0.2593956548 - - PREDICTED: uncharacterized protein LOC104088736 isoform X2 [Nicotiana tomentosiformis]
5 Hb_121954_010 0.2593959216 - - PREDICTED: uncharacterized protein LOC105774125 [Gossypium raimondii]
6 Hb_003279_010 0.2593970238 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
7 Hb_000646_030 0.2593975453 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
8 Hb_025662_020 0.2593977117 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
9 Hb_003797_030 0.259398439 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
10 Hb_000300_460 0.259430385 - - Mavicyanin, putative [Ricinus communis]
11 Hb_000143_070 0.2596191467 - - -
12 Hb_012002_010 0.2599775997 - - hypothetical protein VITISV_016116 [Vitis vinifera]
13 Hb_014929_010 0.2600722017 - - -
14 Hb_004951_050 0.2603603701 - - conserved hypothetical protein [Ricinus communis]
15 Hb_012807_090 0.2611091435 - - PREDICTED: uncharacterized protein LOC100267173 [Vitis vinifera]
16 Hb_000329_460 0.2619199052 - - PREDICTED: protein transport protein Sec61 subunit beta [Cucumis sativus]
17 Hb_158832_010 0.2620808858 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000248_040 0.266057958 - - PREDICTED: uncharacterized protein LOC105632434 [Jatropha curcas]
19 Hb_000920_090 0.2663240585 - - PREDICTED: LOW QUALITY PROTEIN: vinorine synthase-like [Jatropha curcas]
20 Hb_000905_050 0.2726564333 - - Zeamatin precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_000200_080 Hb_000200_080 Hb_004713_020 Hb_004713_020 Hb_000200_080--Hb_004713_020 Hb_005379_010 Hb_005379_010 Hb_000200_080--Hb_005379_010 Hb_074822_010 Hb_074822_010 Hb_000200_080--Hb_074822_010 Hb_121954_010 Hb_121954_010 Hb_000200_080--Hb_121954_010 Hb_003279_010 Hb_003279_010 Hb_000200_080--Hb_003279_010 Hb_000646_030 Hb_000646_030 Hb_000200_080--Hb_000646_030 Hb_004068_010 Hb_004068_010 Hb_004713_020--Hb_004068_010 Hb_000439_020 Hb_000439_020 Hb_004713_020--Hb_000439_020 Hb_005779_090 Hb_005779_090 Hb_004713_020--Hb_005779_090 Hb_007413_030 Hb_007413_030 Hb_004713_020--Hb_007413_030 Hb_015234_010 Hb_015234_010 Hb_004713_020--Hb_015234_010 Hb_012049_030 Hb_012049_030 Hb_004713_020--Hb_012049_030 Hb_005379_010--Hb_000646_030 Hb_025662_020 Hb_025662_020 Hb_005379_010--Hb_025662_020 Hb_003797_030 Hb_003797_030 Hb_005379_010--Hb_003797_030 Hb_005379_010--Hb_074822_010 Hb_005379_010--Hb_121954_010 Hb_005379_010--Hb_003279_010 Hb_074822_010--Hb_121954_010 Hb_074822_010--Hb_003279_010 Hb_074822_010--Hb_000646_030 Hb_074822_010--Hb_025662_020 Hb_074822_010--Hb_003797_030 Hb_121954_010--Hb_003279_010 Hb_121954_010--Hb_000646_030 Hb_121954_010--Hb_025662_020 Hb_121954_010--Hb_003797_030 Hb_003279_010--Hb_000646_030 Hb_003279_010--Hb_025662_020 Hb_003279_010--Hb_003797_030 Hb_000646_030--Hb_025662_020 Hb_000646_030--Hb_003797_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0085414 0 0 0.00601815 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.0323733

CAGE analysis