Hb_004068_010

Information

Type -
Description -
Location Contig4068: 34887-45120
Sequence    

Annotation

kegg
ID pop:POPTR_0014s00350g
description hypothetical protein
nr
ID BAE43642.1
description beta-amyrin synthase [Euphorbia tirucalli]
swissprot
ID Q8W3Z1
description Beta-amyrin synthase OS=Betula platyphylla GN=OSCBPY PE=1 SV=1
trembl
ID Q401R6
description Terpene cyclase/mutase family member OS=Euphorbia tirucalli GN=EtAS PE=2 SV=1
Gene Ontology
ID GO:0042300
description beta-amyrin synthase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40319: 40402-41952 , PASA_asmbl_40320: 42095-43164
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004068_010 0.0 - - beta-amyrin synthase [Euphorbia tirucalli]
2 Hb_004713_020 0.1112448992 - - -
3 Hb_015234_010 0.1707694545 - - PREDICTED: oxysterol-binding protein-related protein 4B [Jatropha curcas]
4 Hb_042463_010 0.1848333094 - - cytochrome c oxidase subunit 2-1 (mitochondrion) (mitochondrion) [Brassica juncea var. tumida]
5 Hb_001276_050 0.1902916321 desease resistance Gene Name: NB-ARC NBS-LRR resistance-like protein 1O [Medicago truncatula]
6 Hb_000439_020 0.1951271573 transcription factor TF Family: ERF PREDICTED: dehydration-responsive element-binding protein 3-like [Jatropha curcas]
7 Hb_005779_090 0.2040333047 transcription factor TF Family: ERF hypothetical protein POPTR_0014s05500g [Populus trichocarpa]
8 Hb_008226_010 0.2055625299 - - PREDICTED: uncharacterized protein LOC105649179 [Jatropha curcas]
9 Hb_000920_340 0.2104350495 - - o-methyltransferase, putative [Ricinus communis]
10 Hb_005092_070 0.2125169613 - - Oligopeptide transporter, putative [Ricinus communis]
11 Hb_000061_290 0.2161144532 - - conserved hypothetical protein [Ricinus communis]
12 Hb_004291_060 0.2172151061 - - hypothetical protein F775_42457 [Aegilops tauschii]
13 Hb_001085_200 0.2185797749 transcription factor TF Family: ARID PREDICTED: high mobility group B protein 15 [Jatropha curcas]
14 Hb_003559_010 0.2191613104 - - Peroxidase 27 precursor, putative [Ricinus communis]
15 Hb_140595_030 0.2207927075 - - -
16 Hb_000029_380 0.2247190227 - - conserved hypothetical protein [Ricinus communis]
17 Hb_006040_160 0.2256016575 - - ribosomal protein S12 (mitochondrion) [Hevea brasiliensis]
18 Hb_001459_020 0.2267022053 - - ankyrin repeat protein [Bruguiera gymnorhiza]
19 Hb_001295_080 0.2287035605 - - Protein KES1, putative [Ricinus communis]
20 Hb_002474_020 0.2291906659 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104585652 [Nelumbo nucifera]

Gene co-expression network

sample Hb_004068_010 Hb_004068_010 Hb_004713_020 Hb_004713_020 Hb_004068_010--Hb_004713_020 Hb_015234_010 Hb_015234_010 Hb_004068_010--Hb_015234_010 Hb_042463_010 Hb_042463_010 Hb_004068_010--Hb_042463_010 Hb_001276_050 Hb_001276_050 Hb_004068_010--Hb_001276_050 Hb_000439_020 Hb_000439_020 Hb_004068_010--Hb_000439_020 Hb_005779_090 Hb_005779_090 Hb_004068_010--Hb_005779_090 Hb_004713_020--Hb_000439_020 Hb_004713_020--Hb_005779_090 Hb_007413_030 Hb_007413_030 Hb_004713_020--Hb_007413_030 Hb_004713_020--Hb_015234_010 Hb_012049_030 Hb_012049_030 Hb_004713_020--Hb_012049_030 Hb_008226_010 Hb_008226_010 Hb_015234_010--Hb_008226_010 Hb_015234_010--Hb_001276_050 Hb_001295_080 Hb_001295_080 Hb_015234_010--Hb_001295_080 Hb_080048_030 Hb_080048_030 Hb_015234_010--Hb_080048_030 Hb_001085_200 Hb_001085_200 Hb_015234_010--Hb_001085_200 Hb_189208_080 Hb_189208_080 Hb_015234_010--Hb_189208_080 Hb_016734_040 Hb_016734_040 Hb_042463_010--Hb_016734_040 Hb_041813_040 Hb_041813_040 Hb_042463_010--Hb_041813_040 Hb_001221_240 Hb_001221_240 Hb_042463_010--Hb_001221_240 Hb_000920_100 Hb_000920_100 Hb_042463_010--Hb_000920_100 Hb_169948_010 Hb_169948_010 Hb_042463_010--Hb_169948_010 Hb_006483_120 Hb_006483_120 Hb_042463_010--Hb_006483_120 Hb_001276_050--Hb_008226_010 Hb_000270_340 Hb_000270_340 Hb_001276_050--Hb_000270_340 Hb_008695_060 Hb_008695_060 Hb_001276_050--Hb_008695_060 Hb_003038_070 Hb_003038_070 Hb_001276_050--Hb_003038_070 Hb_001097_030 Hb_001097_030 Hb_001276_050--Hb_001097_030 Hb_004712_200 Hb_004712_200 Hb_000439_020--Hb_004712_200 Hb_000439_020--Hb_006483_120 Hb_010620_030 Hb_010620_030 Hb_000439_020--Hb_010620_030 Hb_010174_100 Hb_010174_100 Hb_000439_020--Hb_010174_100 Hb_000552_010 Hb_000552_010 Hb_000439_020--Hb_000552_010 Hb_000439_020--Hb_042463_010 Hb_003944_010 Hb_003944_010 Hb_005779_090--Hb_003944_010 Hb_000359_160 Hb_000359_160 Hb_005779_090--Hb_000359_160 Hb_063718_010 Hb_063718_010 Hb_005779_090--Hb_063718_010 Hb_005779_090--Hb_007413_030 Hb_013420_060 Hb_013420_060 Hb_005779_090--Hb_013420_060 Hb_004117_320 Hb_004117_320 Hb_005779_090--Hb_004117_320
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.76449 2.48542 0.404108 8.92976 0.398493 1.5089
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0430279 0.0451464 0.194348 0.353627 33.1661

CAGE analysis