Hb_001276_050

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig1276: 63413-66408
Sequence    

Annotation

kegg
ID mtr:MTR_043s0017
description NBS-LRR resistance-like protein 1O
nr
ID XP_003636514.1
description NBS-LRR resistance-like protein 1O [Medicago truncatula]
swissprot
ID Q7XA39
description Putative disease resistance protein RGA4 OS=Solanum bulbocastanum GN=RGA4 PE=2 SV=1
trembl
ID A0A072VFH1
description NB-ARC domain disease resistance protein OS=Medicago truncatula GN=MTR_1g030770 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001276_050 0.0 desease resistance Gene Name: NB-ARC NBS-LRR resistance-like protein 1O [Medicago truncatula]
2 Hb_015234_010 0.127541436 - - PREDICTED: oxysterol-binding protein-related protein 4B [Jatropha curcas]
3 Hb_008226_010 0.1370277242 - - PREDICTED: uncharacterized protein LOC105649179 [Jatropha curcas]
4 Hb_000270_340 0.1536527667 - - hypothetical protein JCGZ_11546 [Jatropha curcas]
5 Hb_008695_060 0.1551976195 - - unknown [Populus trichocarpa x Populus deltoides]
6 Hb_003038_070 0.1650050694 - - syntaxin, putative [Ricinus communis]
7 Hb_001097_030 0.1675476517 - - nuclear transport factor, putative [Ricinus communis]
8 Hb_000427_020 0.171754418 - - PsbA, partial [Dianthus pygmaeus]
9 Hb_000139_060 0.1720221561 - - Photosystem I reaction center subunit II, chloroplast precursor, putative [Ricinus communis]
10 Hb_000538_110 0.1724524932 - - sucrose synthase 1 [Hevea brasiliensis]
11 Hb_000155_230 0.1725942131 - - rac gtpase, putative [Ricinus communis]
12 Hb_000254_080 0.1737043921 - - PREDICTED: uncharacterized protein LOC105635000 [Jatropha curcas]
13 Hb_002081_140 0.1744180836 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001123_300 0.1760989411 - - hypothetical protein POPTR_0003s16270g [Populus trichocarpa]
15 Hb_000260_520 0.1761406979 - - receptor protein kinase, putative [Ricinus communis]
16 Hb_001105_150 0.1765036972 - - GERMIN-LIKE protein 10 [Populus trichocarpa]
17 Hb_028818_020 0.1770440332 - - PREDICTED: glucomannan 4-beta-mannosyltransferase 9-like [Jatropha curcas]
18 Hb_012633_060 0.1783967857 - - laccase, putative [Ricinus communis]
19 Hb_011214_080 0.1808976233 - - sucrose synthase 1 [Hevea brasiliensis]
20 Hb_140595_020 0.1809074771 - - PREDICTED: vegetative cell wall protein gp1-like [Solanum lycopersicum]

Gene co-expression network

sample Hb_001276_050 Hb_001276_050 Hb_015234_010 Hb_015234_010 Hb_001276_050--Hb_015234_010 Hb_008226_010 Hb_008226_010 Hb_001276_050--Hb_008226_010 Hb_000270_340 Hb_000270_340 Hb_001276_050--Hb_000270_340 Hb_008695_060 Hb_008695_060 Hb_001276_050--Hb_008695_060 Hb_003038_070 Hb_003038_070 Hb_001276_050--Hb_003038_070 Hb_001097_030 Hb_001097_030 Hb_001276_050--Hb_001097_030 Hb_015234_010--Hb_008226_010 Hb_001295_080 Hb_001295_080 Hb_015234_010--Hb_001295_080 Hb_080048_030 Hb_080048_030 Hb_015234_010--Hb_080048_030 Hb_001085_200 Hb_001085_200 Hb_015234_010--Hb_001085_200 Hb_189208_080 Hb_189208_080 Hb_015234_010--Hb_189208_080 Hb_000134_080 Hb_000134_080 Hb_008226_010--Hb_000134_080 Hb_000139_060 Hb_000139_060 Hb_008226_010--Hb_000139_060 Hb_002338_040 Hb_002338_040 Hb_008226_010--Hb_002338_040 Hb_000260_520 Hb_000260_520 Hb_008226_010--Hb_000260_520 Hb_005066_040 Hb_005066_040 Hb_008226_010--Hb_005066_040 Hb_000270_340--Hb_001097_030 Hb_001163_010 Hb_001163_010 Hb_000270_340--Hb_001163_010 Hb_000427_020 Hb_000427_020 Hb_000270_340--Hb_000427_020 Hb_000538_110 Hb_000538_110 Hb_000270_340--Hb_000538_110 Hb_000076_240 Hb_000076_240 Hb_000270_340--Hb_000076_240 Hb_000122_230 Hb_000122_230 Hb_000270_340--Hb_000122_230 Hb_001123_300 Hb_001123_300 Hb_008695_060--Hb_001123_300 Hb_028818_020 Hb_028818_020 Hb_008695_060--Hb_028818_020 Hb_008705_080 Hb_008705_080 Hb_008695_060--Hb_008705_080 Hb_001105_150 Hb_001105_150 Hb_008695_060--Hb_001105_150 Hb_002170_030 Hb_002170_030 Hb_008695_060--Hb_002170_030 Hb_000155_230 Hb_000155_230 Hb_008695_060--Hb_000155_230 Hb_003038_070--Hb_000155_230 Hb_003038_070--Hb_028818_020 Hb_003038_070--Hb_001123_300 Hb_003038_070--Hb_001105_150 Hb_003038_070--Hb_000538_110 Hb_003038_070--Hb_008695_060 Hb_000029_210 Hb_000029_210 Hb_001097_030--Hb_000029_210 Hb_001097_030--Hb_000538_110 Hb_001097_030--Hb_001163_010 Hb_001053_120 Hb_001053_120 Hb_001097_030--Hb_001053_120 Hb_005062_100 Hb_005062_100 Hb_001097_030--Hb_005062_100 Hb_008518_060 Hb_008518_060 Hb_001097_030--Hb_008518_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00784923 0.00777116 0.0174467 0.120608 0 0.0142476
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00556717 0.238345

CAGE analysis