Hb_012049_030

Information

Type -
Description -
Location Contig12049: 18519-19971
Sequence    

Annotation

kegg
ID atr:s00626p00011520
description AMTR_s00626p00011520; hypothetical protein
nr
ID YP_004327649.1
description RNA polymerase beta subunit [Hevea brasiliensis]
swissprot
ID Q0G9M7
description DNA-directed RNA polymerase subunit beta OS=Liriodendron tulipifera GN=rpoB PE=3 SV=2
trembl
ID F2X0A3
description DNA-directed RNA polymerase subunit beta OS=Hevea brasiliensis GN=rpoB PE=3 SV=1
Gene Ontology
ID GO:0009507
description rna polymerase beta subunit

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012049_030 0.0 - - RNA polymerase beta subunit [Hevea brasiliensis]
2 Hb_000275_100 0.2123234768 - - BnaC09g26910D [Brassica napus]
3 Hb_189208_030 0.2146574074 - - -
4 Hb_004713_020 0.218657584 - - -
5 Hb_003333_040 0.2279108827 - - ankyrin repeat-containing protein, putative [Ricinus communis]
6 Hb_004393_040 0.2284557712 transcription factor TF Family: RAV PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g50680-like isoform X2 [Jatropha curcas]
7 Hb_007413_030 0.2286960367 - - kinase, putative [Ricinus communis]
8 Hb_005399_050 0.2307636069 - - DNA-directed RNA polymerase subunit beta [Glycine soja]
9 Hb_185274_010 0.2332635301 - - hypothetical protein ARALYDRAFT_330174 [Arabidopsis lyrata subsp. lyrata]
10 Hb_000920_090 0.2333333138 - - PREDICTED: LOW QUALITY PROTEIN: vinorine synthase-like [Jatropha curcas]
11 Hb_001338_150 0.2355305435 - - hypothetical chloroplast RF1 [Dillenia indica]
12 Hb_007810_070 0.2364567041 - - hypothetical protein VITISV_027174 [Vitis vinifera]
13 Hb_003032_090 0.2398315271 - - hypothetical protein POPTR_0018s06450g [Populus trichocarpa]
14 Hb_000029_380 0.241297965 - - conserved hypothetical protein [Ricinus communis]
15 Hb_003963_040 0.2424302838 - - ATP-dependent Clp protease proteolytic subunit [Hevea brasiliensis]
16 Hb_003693_030 0.2428126773 - - NADH dehydrogenase subunit 7 [Hevea brasiliensis]
17 Hb_032733_020 0.2445849816 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180-like isoform X4 [Citrus sinensis]
18 Hb_000367_220 0.2478863008 - - hypothetical protein RCOM_1470580 [Ricinus communis]
19 Hb_003944_010 0.2490212634 - - PREDICTED: receptor-like protein kinase HSL1 [Jatropha curcas]
20 Hb_141708_010 0.2495610104 - - hypothetical protein EUTSA_v10011731mg [Eutrema salsugineum]

Gene co-expression network

sample Hb_012049_030 Hb_012049_030 Hb_000275_100 Hb_000275_100 Hb_012049_030--Hb_000275_100 Hb_189208_030 Hb_189208_030 Hb_012049_030--Hb_189208_030 Hb_004713_020 Hb_004713_020 Hb_012049_030--Hb_004713_020 Hb_003333_040 Hb_003333_040 Hb_012049_030--Hb_003333_040 Hb_004393_040 Hb_004393_040 Hb_012049_030--Hb_004393_040 Hb_007413_030 Hb_007413_030 Hb_012049_030--Hb_007413_030 Hb_007595_020 Hb_007595_020 Hb_000275_100--Hb_007595_020 Hb_145745_020 Hb_145745_020 Hb_000275_100--Hb_145745_020 Hb_010171_010 Hb_010171_010 Hb_000275_100--Hb_010171_010 Hb_000367_220 Hb_000367_220 Hb_000275_100--Hb_000367_220 Hb_011649_040 Hb_011649_040 Hb_000275_100--Hb_011649_040 Hb_007595_050 Hb_007595_050 Hb_000275_100--Hb_007595_050 Hb_189208_030--Hb_004393_040 Hb_087797_010 Hb_087797_010 Hb_189208_030--Hb_087797_010 Hb_003093_050 Hb_003093_050 Hb_189208_030--Hb_003093_050 Hb_000530_060 Hb_000530_060 Hb_189208_030--Hb_000530_060 Hb_029584_020 Hb_029584_020 Hb_189208_030--Hb_029584_020 Hb_001089_120 Hb_001089_120 Hb_189208_030--Hb_001089_120 Hb_004068_010 Hb_004068_010 Hb_004713_020--Hb_004068_010 Hb_000439_020 Hb_000439_020 Hb_004713_020--Hb_000439_020 Hb_005779_090 Hb_005779_090 Hb_004713_020--Hb_005779_090 Hb_004713_020--Hb_007413_030 Hb_015234_010 Hb_015234_010 Hb_004713_020--Hb_015234_010 Hb_013420_060 Hb_013420_060 Hb_003333_040--Hb_013420_060 Hb_001671_090 Hb_001671_090 Hb_003333_040--Hb_001671_090 Hb_003333_040--Hb_007413_030 Hb_032733_020 Hb_032733_020 Hb_003333_040--Hb_032733_020 Hb_053998_020 Hb_053998_020 Hb_003333_040--Hb_053998_020 Hb_114271_010 Hb_114271_010 Hb_003333_040--Hb_114271_010 Hb_006718_030 Hb_006718_030 Hb_004393_040--Hb_006718_030 Hb_000140_040 Hb_000140_040 Hb_004393_040--Hb_000140_040 Hb_180094_010 Hb_180094_010 Hb_004393_040--Hb_180094_010 Hb_003805_110 Hb_003805_110 Hb_004393_040--Hb_003805_110 Hb_000152_300 Hb_000152_300 Hb_004393_040--Hb_000152_300 Hb_063718_010 Hb_063718_010 Hb_007413_030--Hb_063718_010 Hb_007413_030--Hb_005779_090 Hb_002835_090 Hb_002835_090 Hb_007413_030--Hb_002835_090 Hb_010068_090 Hb_010068_090 Hb_007413_030--Hb_010068_090 Hb_007413_030--Hb_000439_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.247562 0.0248409 0.190778 0.183411 0 0.128127
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 1.53959

CAGE analysis