Hb_000275_100

Information

Type -
Description -
Location Contig275: 122723-123256
Sequence    

Annotation

kegg
ID pvu:PHAVU_002G028400g
description hypothetical protein
nr
ID CDX71650.1
description BnaC09g26910D [Brassica napus]
swissprot
ID -
description -
trembl
ID A0A0D3BH89
description Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1
Gene Ontology
ID GO:0009507
description unknow protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28809: 123008-123177
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000275_100 0.0 - - BnaC09g26910D [Brassica napus]
2 Hb_007595_020 0.1505560764 - - maturase K [Hevea brasiliensis]
3 Hb_145745_020 0.1566950243 - - Cell wall-associated hydrolase, partial [Medicago truncatula]
4 Hb_010171_010 0.1574693422 - - hypothetical protein VITISV_033646 [Vitis vinifera]
5 Hb_000367_220 0.1587778024 - - hypothetical protein RCOM_1470580 [Ricinus communis]
6 Hb_011649_040 0.1632999099 - - hypothetical protein CISIN_1g039733mg [Citrus sinensis]
7 Hb_007595_050 0.1640235571 - - hypothetical chloroplast RF2 [Hevea brasiliensis]
8 Hb_015234_010 0.1658641059 - - PREDICTED: oxysterol-binding protein-related protein 4B [Jatropha curcas]
9 Hb_007645_070 0.1669500725 - - photosystem II cytochrome b559 alpha subunit [Cuscuta obtusiflora]
10 Hb_007237_100 0.1702304948 - - DNA-directed RNA polymerase beta chain, putative [Ricinus communis]
11 Hb_000029_380 0.171725368 - - conserved hypothetical protein [Ricinus communis]
12 Hb_005228_060 0.1745827369 - - PREDICTED: uncharacterized protein LOC102604101 [Solanum tuberosum]
13 Hb_185274_010 0.1778938438 - - hypothetical protein ARALYDRAFT_330174 [Arabidopsis lyrata subsp. lyrata]
14 Hb_068804_110 0.1787275457 - - PREDICTED: serine hydroxymethyltransferase, mitochondrial [Jatropha curcas]
15 Hb_141708_010 0.1883152076 - - hypothetical protein EUTSA_v10011731mg [Eutrema salsugineum]
16 Hb_002044_070 0.1884398119 - - Chlorophyll a-b binding protein 3, chloroplastic [Theobroma cacao]
17 Hb_002338_040 0.1895482732 - - conserved hypothetical protein [Ricinus communis]
18 Hb_008948_130 0.1904768397 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001295_080 0.1904838224 - - Protein KES1, putative [Ricinus communis]
20 Hb_005399_050 0.1914755336 - - DNA-directed RNA polymerase subunit beta [Glycine soja]

Gene co-expression network

sample Hb_000275_100 Hb_000275_100 Hb_007595_020 Hb_007595_020 Hb_000275_100--Hb_007595_020 Hb_145745_020 Hb_145745_020 Hb_000275_100--Hb_145745_020 Hb_010171_010 Hb_010171_010 Hb_000275_100--Hb_010171_010 Hb_000367_220 Hb_000367_220 Hb_000275_100--Hb_000367_220 Hb_011649_040 Hb_011649_040 Hb_000275_100--Hb_011649_040 Hb_007595_050 Hb_007595_050 Hb_000275_100--Hb_007595_050 Hb_068804_110 Hb_068804_110 Hb_007595_020--Hb_068804_110 Hb_007595_020--Hb_000367_220 Hb_002044_070 Hb_002044_070 Hb_007595_020--Hb_002044_070 Hb_005228_060 Hb_005228_060 Hb_007595_020--Hb_005228_060 Hb_000009_470 Hb_000009_470 Hb_007595_020--Hb_000009_470 Hb_029622_060 Hb_029622_060 Hb_007595_020--Hb_029622_060 Hb_145745_020--Hb_011649_040 Hb_141708_010 Hb_141708_010 Hb_145745_020--Hb_141708_010 Hb_012049_010 Hb_012049_010 Hb_145745_020--Hb_012049_010 Hb_000015_220 Hb_000015_220 Hb_145745_020--Hb_000015_220 Hb_001674_050 Hb_001674_050 Hb_145745_020--Hb_001674_050 Hb_010171_010--Hb_011649_040 Hb_010171_010--Hb_145745_020 Hb_000483_320 Hb_000483_320 Hb_010171_010--Hb_000483_320 Hb_007237_100 Hb_007237_100 Hb_010171_010--Hb_007237_100 Hb_000915_190 Hb_000915_190 Hb_010171_010--Hb_000915_190 Hb_000367_220--Hb_068804_110 Hb_156850_020 Hb_156850_020 Hb_000367_220--Hb_156850_020 Hb_028960_010 Hb_028960_010 Hb_000367_220--Hb_028960_010 Hb_123689_010 Hb_123689_010 Hb_000367_220--Hb_123689_010 Hb_007044_020 Hb_007044_020 Hb_000367_220--Hb_007044_020 Hb_011649_040--Hb_141708_010 Hb_011649_040--Hb_000015_220 Hb_011649_040--Hb_012049_010 Hb_003861_150 Hb_003861_150 Hb_007595_050--Hb_003861_150 Hb_002835_090 Hb_002835_090 Hb_007595_050--Hb_002835_090 Hb_007595_050--Hb_007595_020 Hb_007595_050--Hb_005228_060 Hb_011900_020 Hb_011900_020 Hb_007595_050--Hb_011900_020 Hb_007595_050--Hb_156850_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
93.7562 64.5545 1255.72 1260.03 16.076 678.513
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.59038 1.25825 2.21377 37.8671 6763.79

CAGE analysis