Hb_007237_100

Information

Type -
Description -
Location Contig7237: 81973-85211
Sequence    

Annotation

kegg
ID rcu:RCOM_1655220
description DNA-directed RNA polymerase beta chain, putative
nr
ID XP_002519783.1
description DNA-directed RNA polymerase beta chain, putative [Ricinus communis]
swissprot
ID B1NWE0
description DNA-directed RNA polymerase subunit beta'' OS=Manihot esculenta GN=rpoC2 PE=3 SV=1
trembl
ID K7P8V9
description DNA-directed RNA polymerase (Fragment) OS=Coffea ratsimamangae GN=rpoC2 PE=3 SV=1
Gene Ontology
ID GO:0009536
description rna polymerase beta partial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007237_100 0.0 - - DNA-directed RNA polymerase beta chain, putative [Ricinus communis]
2 Hb_001856_240 0.1396747716 transcription factor TF Family: TCP Plastid transcription factor 1, putative isoform 1 [Theobroma cacao]
3 Hb_005483_050 0.1402798808 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000825_010 0.1418017164 - - PREDICTED: trans-cinnamate 4-monooxygenase [Jatropha curcas]
5 Hb_001104_080 0.1419799942 - - peroxiredoxin, putative [Ricinus communis]
6 Hb_016334_010 0.1424131341 - - hypothetical protein JCGZ_01311 [Jatropha curcas]
7 Hb_008948_130 0.1427756702 - - conserved hypothetical protein [Ricinus communis]
8 Hb_132840_050 0.1437951967 - - PREDICTED: protein CURVATURE THYLAKOID 1B, chloroplastic [Jatropha curcas]
9 Hb_153106_010 0.1463175029 - - hypothetical protein JCGZ_01308 [Jatropha curcas]
10 Hb_032631_060 0.1465714035 - - Myosin heavy chain, putative [Ricinus communis]
11 Hb_000029_150 0.1469672813 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000923_030 0.1470997802 - - F-box family protein [Populus trichocarpa]
13 Hb_000251_160 0.1477049648 - - chlorophyll A/B binding protein, putative [Ricinus communis]
14 Hb_001310_020 0.148270566 - - PREDICTED: cyclin-D5-1-like isoform X2 [Jatropha curcas]
15 Hb_000243_190 0.1488271755 transcription factor TF Family: MIKC flowering-related B-class MADS-box protein [Vitis vinifera]
16 Hb_010812_030 0.1490593926 - - conserved hypothetical protein [Ricinus communis]
17 Hb_180007_010 0.1490931345 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
18 Hb_003090_050 0.1491316963 - - fructose-1,6-bisphosphatase, putative [Ricinus communis]
19 Hb_001135_170 0.1493624983 transcription factor TF Family: Orphans Two-component response regulator ARR2, putative [Ricinus communis]
20 Hb_007559_020 0.1494154048 - - peptidylprolyl isomerase, putative [Ricinus communis]

Gene co-expression network

sample Hb_007237_100 Hb_007237_100 Hb_001856_240 Hb_001856_240 Hb_007237_100--Hb_001856_240 Hb_005483_050 Hb_005483_050 Hb_007237_100--Hb_005483_050 Hb_000825_010 Hb_000825_010 Hb_007237_100--Hb_000825_010 Hb_001104_080 Hb_001104_080 Hb_007237_100--Hb_001104_080 Hb_016334_010 Hb_016334_010 Hb_007237_100--Hb_016334_010 Hb_008948_130 Hb_008948_130 Hb_007237_100--Hb_008948_130 Hb_008748_050 Hb_008748_050 Hb_001856_240--Hb_008748_050 Hb_176135_010 Hb_176135_010 Hb_001856_240--Hb_176135_010 Hb_003847_070 Hb_003847_070 Hb_001856_240--Hb_003847_070 Hb_000012_370 Hb_000012_370 Hb_001856_240--Hb_000012_370 Hb_001006_160 Hb_001006_160 Hb_001856_240--Hb_001006_160 Hb_002870_070 Hb_002870_070 Hb_001856_240--Hb_002870_070 Hb_000243_190 Hb_000243_190 Hb_005483_050--Hb_000243_190 Hb_000940_060 Hb_000940_060 Hb_005483_050--Hb_000940_060 Hb_132840_050 Hb_132840_050 Hb_005483_050--Hb_132840_050 Hb_180007_010 Hb_180007_010 Hb_005483_050--Hb_180007_010 Hb_000029_150 Hb_000029_150 Hb_005483_050--Hb_000029_150 Hb_000251_160 Hb_000251_160 Hb_005483_050--Hb_000251_160 Hb_000825_010--Hb_001104_080 Hb_000923_030 Hb_000923_030 Hb_000825_010--Hb_000923_030 Hb_000825_010--Hb_000251_160 Hb_007559_020 Hb_007559_020 Hb_000825_010--Hb_007559_020 Hb_000825_010--Hb_132840_050 Hb_005605_020 Hb_005605_020 Hb_000825_010--Hb_005605_020 Hb_032631_060 Hb_032631_060 Hb_001104_080--Hb_032631_060 Hb_001104_080--Hb_000923_030 Hb_000805_080 Hb_000805_080 Hb_001104_080--Hb_000805_080 Hb_001104_080--Hb_007559_020 Hb_000010_380 Hb_000010_380 Hb_001104_080--Hb_000010_380 Hb_000762_050 Hb_000762_050 Hb_016334_010--Hb_000762_050 Hb_000003_530 Hb_000003_530 Hb_016334_010--Hb_000003_530 Hb_004116_030 Hb_004116_030 Hb_016334_010--Hb_004116_030 Hb_016334_010--Hb_132840_050 Hb_016334_010--Hb_000243_190 Hb_008725_280 Hb_008725_280 Hb_016334_010--Hb_008725_280 Hb_000221_130 Hb_000221_130 Hb_008948_130--Hb_000221_130 Hb_003033_020 Hb_003033_020 Hb_008948_130--Hb_003033_020 Hb_007044_020 Hb_007044_020 Hb_008948_130--Hb_007044_020 Hb_001191_060 Hb_001191_060 Hb_008948_130--Hb_001191_060 Hb_010812_030 Hb_010812_030 Hb_008948_130--Hb_010812_030 Hb_001310_020 Hb_001310_020 Hb_008948_130--Hb_001310_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.963037 0.306131 0 0.140067
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.034219 3.04578

CAGE analysis