Hb_000483_320

Information

Type -
Description -
Location Contig483: 294206-295342
Sequence    

Annotation

kegg
ID rcu:RCOM_0120910
description Major pollen allergen Ory s 1 precursor, putative
nr
ID XP_002531220.1
description Major pollen allergen Ory s 1 precursor, putative [Ricinus communis]
swissprot
ID O23547
description Expansin-like B1 OS=Arabidopsis thaliana GN=EXLB1 PE=2 SV=2
trembl
ID B9SZ01
description Major pollen allergen Ory s 1, putative OS=Ricinus communis GN=RCOM_0120910 PE=3 SV=1
Gene Ontology
ID GO:0005576
description expansin-like b1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000483_320 0.0 - - Major pollen allergen Ory s 1 precursor, putative [Ricinus communis]
2 Hb_002377_010 0.1334408218 transcription factor TF Family: C2C2-CO-like PREDICTED: zinc finger protein CONSTANS-LIKE 2-like [Jatropha curcas]
3 Hb_000343_080 0.1483872418 - - conserved hypothetical protein [Ricinus communis]
4 Hb_188063_040 0.1967667356 transcription factor TF Family: TCP transcription factor, putative [Ricinus communis]
5 Hb_095744_010 0.1975334348 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD1-1 [Fragaria vesca subsp. vesca]
6 Hb_001863_470 0.2009731109 - - PREDICTED: uncharacterized protein LOC105630613 [Jatropha curcas]
7 Hb_001545_010 0.2015588853 - - PREDICTED: serine/threonine-protein kinase TNNI3K-like [Cucumis sativus]
8 Hb_000088_140 0.2022126145 - - -
9 Hb_010171_010 0.2045027762 - - hypothetical protein VITISV_033646 [Vitis vinifera]
10 Hb_154038_010 0.2056911549 - - cytochrome P450, putative [Ricinus communis]
11 Hb_006483_040 0.2057773566 - - PREDICTED: uncharacterized protein LOC105639715 [Jatropha curcas]
12 Hb_001472_150 0.2058726868 - - PREDICTED: cytochrome P450 86A7 [Jatropha curcas]
13 Hb_064445_020 0.2063510098 - - PREDICTED: serine carboxypeptidase-like 34 [Populus euphratica]
14 Hb_008453_050 0.2068125851 - - PREDICTED: peroxidase 64 [Jatropha curcas]
15 Hb_002326_010 0.2079947073 transcription factor TF Family: G2-like hypothetical protein RCOM_1592640 [Ricinus communis]
16 Hb_001593_040 0.2080824269 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
17 Hb_072771_010 0.2092715642 - - Endo-1,4-beta-xylanase C precursor, putative [Ricinus communis]
18 Hb_001345_050 0.2094710292 - - hypothetical protein POPTR_0014s14480g [Populus trichocarpa]
19 Hb_001474_060 0.209660988 transcription factor TF Family: ARF PREDICTED: auxin response factor 16 [Jatropha curcas]
20 Hb_000224_190 0.2109523883 - - zinc finger protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000483_320 Hb_000483_320 Hb_002377_010 Hb_002377_010 Hb_000483_320--Hb_002377_010 Hb_000343_080 Hb_000343_080 Hb_000483_320--Hb_000343_080 Hb_188063_040 Hb_188063_040 Hb_000483_320--Hb_188063_040 Hb_095744_010 Hb_095744_010 Hb_000483_320--Hb_095744_010 Hb_001863_470 Hb_001863_470 Hb_000483_320--Hb_001863_470 Hb_001545_010 Hb_001545_010 Hb_000483_320--Hb_001545_010 Hb_002377_010--Hb_000343_080 Hb_002391_010 Hb_002391_010 Hb_002377_010--Hb_002391_010 Hb_001926_080 Hb_001926_080 Hb_002377_010--Hb_001926_080 Hb_000485_100 Hb_000485_100 Hb_002377_010--Hb_000485_100 Hb_001534_130 Hb_001534_130 Hb_002377_010--Hb_001534_130 Hb_006895_010 Hb_006895_010 Hb_002377_010--Hb_006895_010 Hb_001593_040 Hb_001593_040 Hb_000343_080--Hb_001593_040 Hb_064445_020 Hb_064445_020 Hb_000343_080--Hb_064445_020 Hb_002326_010 Hb_002326_010 Hb_000343_080--Hb_002326_010 Hb_000343_080--Hb_001863_470 Hb_008453_050 Hb_008453_050 Hb_000343_080--Hb_008453_050 Hb_154038_010 Hb_154038_010 Hb_000343_080--Hb_154038_010 Hb_003528_100 Hb_003528_100 Hb_188063_040--Hb_003528_100 Hb_046825_010 Hb_046825_010 Hb_188063_040--Hb_046825_010 Hb_000160_120 Hb_000160_120 Hb_188063_040--Hb_000160_120 Hb_000363_070 Hb_000363_070 Hb_188063_040--Hb_000363_070 Hb_000268_050 Hb_000268_050 Hb_188063_040--Hb_000268_050 Hb_065774_010 Hb_065774_010 Hb_188063_040--Hb_065774_010 Hb_132880_010 Hb_132880_010 Hb_095744_010--Hb_132880_010 Hb_003549_100 Hb_003549_100 Hb_095744_010--Hb_003549_100 Hb_004459_010 Hb_004459_010 Hb_095744_010--Hb_004459_010 Hb_144550_010 Hb_144550_010 Hb_095744_010--Hb_144550_010 Hb_000917_300 Hb_000917_300 Hb_095744_010--Hb_000917_300 Hb_010589_010 Hb_010589_010 Hb_095744_010--Hb_010589_010 Hb_001863_470--Hb_008453_050 Hb_072771_010 Hb_072771_010 Hb_001863_470--Hb_072771_010 Hb_001863_470--Hb_002326_010 Hb_001345_050 Hb_001345_050 Hb_001863_470--Hb_001345_050 Hb_000224_190 Hb_000224_190 Hb_001863_470--Hb_000224_190 Hb_001863_470--Hb_154038_010 Hb_000904_120 Hb_000904_120 Hb_001545_010--Hb_000904_120 Hb_003723_050 Hb_003723_050 Hb_001545_010--Hb_003723_050 Hb_125573_010 Hb_125573_010 Hb_001545_010--Hb_125573_010 Hb_000684_070 Hb_000684_070 Hb_001545_010--Hb_000684_070 Hb_000608_150 Hb_000608_150 Hb_001545_010--Hb_000608_150 Hb_147028_010 Hb_147028_010 Hb_001545_010--Hb_147028_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0774861 0.145821 0 0.0406874
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.233033

CAGE analysis