Hb_000343_080

Information

Type -
Description -
Location Contig343: 50117-51244
Sequence    

Annotation

kegg
ID rcu:RCOM_1495360
description hypothetical protein
nr
ID XP_002516082.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RQR3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1495360 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35832: 50530-51171
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000343_080 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001593_040 0.08054549 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
3 Hb_064445_020 0.0806013732 - - PREDICTED: serine carboxypeptidase-like 34 [Populus euphratica]
4 Hb_002326_010 0.0824966078 transcription factor TF Family: G2-like hypothetical protein RCOM_1592640 [Ricinus communis]
5 Hb_001863_470 0.0847415513 - - PREDICTED: uncharacterized protein LOC105630613 [Jatropha curcas]
6 Hb_008453_050 0.0853637402 - - PREDICTED: peroxidase 64 [Jatropha curcas]
7 Hb_154038_010 0.0865855449 - - cytochrome P450, putative [Ricinus communis]
8 Hb_000224_190 0.0893887647 - - zinc finger protein, putative [Ricinus communis]
9 Hb_006483_040 0.0894499602 - - PREDICTED: uncharacterized protein LOC105639715 [Jatropha curcas]
10 Hb_002377_010 0.0901549179 transcription factor TF Family: C2C2-CO-like PREDICTED: zinc finger protein CONSTANS-LIKE 2-like [Jatropha curcas]
11 Hb_095744_010 0.092215947 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD1-1 [Fragaria vesca subsp. vesca]
12 Hb_001472_150 0.0929083237 - - PREDICTED: cytochrome P450 86A7 [Jatropha curcas]
13 Hb_000077_040 0.0930454923 - - PREDICTED: O-acyltransferase WSD1-like [Jatropha curcas]
14 Hb_003025_170 0.0937877809 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g59900 [Jatropha curcas]
15 Hb_104014_020 0.0944847404 - - PREDICTED: probable receptor-like protein kinase At5g39020 isoform X2 [Jatropha curcas]
16 Hb_072771_010 0.0956871288 - - Endo-1,4-beta-xylanase C precursor, putative [Ricinus communis]
17 Hb_001345_050 0.0963666381 - - hypothetical protein POPTR_0014s14480g [Populus trichocarpa]
18 Hb_000115_030 0.0986235839 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 42 [Jatropha curcas]
19 Hb_144550_010 0.1022909538 - - PREDICTED: putative UDP-rhamnose:rhamnosyltransferase 1 [Jatropha curcas]
20 Hb_132880_010 0.1047408222 - - PREDICTED: uncharacterized protein LOC105641595 [Jatropha curcas]

Gene co-expression network

sample Hb_000343_080 Hb_000343_080 Hb_001593_040 Hb_001593_040 Hb_000343_080--Hb_001593_040 Hb_064445_020 Hb_064445_020 Hb_000343_080--Hb_064445_020 Hb_002326_010 Hb_002326_010 Hb_000343_080--Hb_002326_010 Hb_001863_470 Hb_001863_470 Hb_000343_080--Hb_001863_470 Hb_008453_050 Hb_008453_050 Hb_000343_080--Hb_008453_050 Hb_154038_010 Hb_154038_010 Hb_000343_080--Hb_154038_010 Hb_001593_040--Hb_064445_020 Hb_001593_040--Hb_002326_010 Hb_001593_040--Hb_008453_050 Hb_000077_040 Hb_000077_040 Hb_001593_040--Hb_000077_040 Hb_001593_040--Hb_154038_010 Hb_104014_020 Hb_104014_020 Hb_001593_040--Hb_104014_020 Hb_064445_020--Hb_002326_010 Hb_064445_020--Hb_154038_010 Hb_064445_020--Hb_008453_050 Hb_006483_040 Hb_006483_040 Hb_064445_020--Hb_006483_040 Hb_000224_190 Hb_000224_190 Hb_064445_020--Hb_000224_190 Hb_002326_010--Hb_000224_190 Hb_002326_010--Hb_008453_050 Hb_002326_010--Hb_154038_010 Hb_072771_010 Hb_072771_010 Hb_002326_010--Hb_072771_010 Hb_001863_470--Hb_008453_050 Hb_001863_470--Hb_072771_010 Hb_001863_470--Hb_002326_010 Hb_001345_050 Hb_001345_050 Hb_001863_470--Hb_001345_050 Hb_001863_470--Hb_000224_190 Hb_001863_470--Hb_154038_010 Hb_008453_050--Hb_154038_010 Hb_008453_050--Hb_006483_040 Hb_008453_050--Hb_072771_010 Hb_008453_050--Hb_001345_050 Hb_154038_010--Hb_006483_040 Hb_154038_010--Hb_072771_010 Hb_154038_010--Hb_001345_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.394911 0.911711 0 0.0342831
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 1.35163

CAGE analysis