Hb_010171_010

Information

Type -
Description -
Location Contig10171: 3627-7740
Sequence    

Annotation

kegg
ID csv:101215079
description uncharacterized LOC101215079
nr
ID CAN70361.1
description hypothetical protein VITISV_033646 [Vitis vinifera]
swissprot
ID P10978
description Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1
trembl
ID A5BN86
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_033646 PE=4 SV=1
Gene Ontology
ID GO:0043229
description hypothetical protein VITISV_033646

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010171_010 0.0 - - hypothetical protein VITISV_033646 [Vitis vinifera]
2 Hb_000275_100 0.1574693422 - - BnaC09g26910D [Brassica napus]
3 Hb_011649_040 0.1701583472 - - hypothetical protein CISIN_1g039733mg [Citrus sinensis]
4 Hb_145745_020 0.1969742453 - - Cell wall-associated hydrolase, partial [Medicago truncatula]
5 Hb_000483_320 0.2045027762 - - Major pollen allergen Ory s 1 precursor, putative [Ricinus communis]
6 Hb_007237_100 0.2316846934 - - DNA-directed RNA polymerase beta chain, putative [Ricinus communis]
7 Hb_000915_190 0.2335805684 - - -
8 Hb_005656_130 0.2344806721 - - PREDICTED: calmodulin-like protein 7 [Jatropha curcas]
9 Hb_115031_010 0.2381144615 - - photosystem II P680 chlorophyll A apoprotein, partial (chloroplast) [Oenothera grandiflora]
10 Hb_000419_100 0.2560620097 - - -
11 Hb_007645_070 0.2591789745 - - photosystem II cytochrome b559 alpha subunit [Cuscuta obtusiflora]
12 Hb_010068_090 0.2592236821 - - hypothetical protein JCGZ_00885 [Jatropha curcas]
13 Hb_188063_040 0.2624362483 transcription factor TF Family: TCP transcription factor, putative [Ricinus communis]
14 Hb_001814_060 0.2653423797 - - PREDICTED: uncharacterized protein LOC105650637 [Jatropha curcas]
15 Hb_015234_010 0.2667906074 - - PREDICTED: oxysterol-binding protein-related protein 4B [Jatropha curcas]
16 Hb_106692_020 0.2671574135 - - NADH dehydrogenase subunit F, partial (chloroplast) [Hevea sp. Gillespie 4272]
17 Hb_141708_010 0.2756477369 - - hypothetical protein EUTSA_v10011731mg [Eutrema salsugineum]
18 Hb_011649_020 0.2778273332 - - PREDICTED: uncharacterized protein LOC104212904 isoform X1 [Nicotiana sylvestris]
19 Hb_001674_050 0.2794580714 - - cytochrome b6 (chloroplast) [Apios americana]
20 Hb_007595_050 0.2797426299 - - hypothetical chloroplast RF2 [Hevea brasiliensis]

Gene co-expression network

sample Hb_010171_010 Hb_010171_010 Hb_000275_100 Hb_000275_100 Hb_010171_010--Hb_000275_100 Hb_011649_040 Hb_011649_040 Hb_010171_010--Hb_011649_040 Hb_145745_020 Hb_145745_020 Hb_010171_010--Hb_145745_020 Hb_000483_320 Hb_000483_320 Hb_010171_010--Hb_000483_320 Hb_007237_100 Hb_007237_100 Hb_010171_010--Hb_007237_100 Hb_000915_190 Hb_000915_190 Hb_010171_010--Hb_000915_190 Hb_007595_020 Hb_007595_020 Hb_000275_100--Hb_007595_020 Hb_000275_100--Hb_145745_020 Hb_000367_220 Hb_000367_220 Hb_000275_100--Hb_000367_220 Hb_000275_100--Hb_011649_040 Hb_007595_050 Hb_007595_050 Hb_000275_100--Hb_007595_050 Hb_011649_040--Hb_145745_020 Hb_141708_010 Hb_141708_010 Hb_011649_040--Hb_141708_010 Hb_000015_220 Hb_000015_220 Hb_011649_040--Hb_000015_220 Hb_012049_010 Hb_012049_010 Hb_011649_040--Hb_012049_010 Hb_145745_020--Hb_141708_010 Hb_145745_020--Hb_012049_010 Hb_145745_020--Hb_000015_220 Hb_001674_050 Hb_001674_050 Hb_145745_020--Hb_001674_050 Hb_002377_010 Hb_002377_010 Hb_000483_320--Hb_002377_010 Hb_000343_080 Hb_000343_080 Hb_000483_320--Hb_000343_080 Hb_188063_040 Hb_188063_040 Hb_000483_320--Hb_188063_040 Hb_095744_010 Hb_095744_010 Hb_000483_320--Hb_095744_010 Hb_001863_470 Hb_001863_470 Hb_000483_320--Hb_001863_470 Hb_001545_010 Hb_001545_010 Hb_000483_320--Hb_001545_010 Hb_001856_240 Hb_001856_240 Hb_007237_100--Hb_001856_240 Hb_005483_050 Hb_005483_050 Hb_007237_100--Hb_005483_050 Hb_000825_010 Hb_000825_010 Hb_007237_100--Hb_000825_010 Hb_001104_080 Hb_001104_080 Hb_007237_100--Hb_001104_080 Hb_016334_010 Hb_016334_010 Hb_007237_100--Hb_016334_010 Hb_008948_130 Hb_008948_130 Hb_007237_100--Hb_008948_130 Hb_001814_060 Hb_001814_060 Hb_000915_190--Hb_001814_060 Hb_007793_030 Hb_007793_030 Hb_000915_190--Hb_007793_030 Hb_001054_010 Hb_001054_010 Hb_000915_190--Hb_001054_010 Hb_000659_090 Hb_000659_090 Hb_000915_190--Hb_000659_090 Hb_006237_030 Hb_006237_030 Hb_000915_190--Hb_006237_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.00787629 0.00820492 0 0.0102771
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.0400345

CAGE analysis