Hb_001054_010

Information

Type -
Description -
Location Contig1054: 41981-54924
Sequence    

Annotation

kegg
ID csv:101212001
description uncharacterized LOC101212001
nr
ID CAN71245.1
description hypothetical protein VITISV_011091 [Vitis vinifera]
swissprot
ID P04146
description Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3
trembl
ID A5AG02
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_011091 PE=4 SV=1
Gene Ontology
ID GO:0003676
description gag-pol polyprotein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001054_010 0.0 - - hypothetical protein VITISV_011091 [Vitis vinifera]
2 Hb_002411_020 0.2178898134 - - hypothetical protein JCGZ_24577 [Jatropha curcas]
3 Hb_000915_190 0.237102277 - - -
4 Hb_000157_110 0.2651449561 - - hypothetical protein Csa_6G439410 [Cucumis sativus]
5 Hb_017098_010 0.2665289256 - - ABC transporter family protein [Hevea brasiliensis]
6 Hb_125431_010 0.2676891513 - - -
7 Hb_002400_150 0.2783531913 - - PREDICTED: uncharacterized protein LOC105650070 isoform X1 [Jatropha curcas]
8 Hb_092650_010 0.2790446088 - - Uncharacterized protein TCM_017953 [Theobroma cacao]
9 Hb_033683_010 0.2858104157 - - myo inositol monophosphatase, putative [Ricinus communis]
10 Hb_001814_060 0.2875435335 - - PREDICTED: uncharacterized protein LOC105650637 [Jatropha curcas]
11 Hb_130250_010 0.2972078828 - - Putative disease resistance RGA4 [Gossypium arboreum]
12 Hb_000659_090 0.2986464513 desease resistance Gene Name: NB-ARC leucine-rich repeat containing protein, putative [Ricinus communis]
13 Hb_021313_010 0.300202714 - - hypothetical protein POPTR_0010s24380g [Populus trichocarpa]
14 Hb_062013_010 0.3008776632 - - phosphoprotein phosphatase, putative [Ricinus communis]
15 Hb_001080_150 0.3036144481 - - PREDICTED: Niemann-Pick C1 protein-like [Jatropha curcas]
16 Hb_006237_030 0.3042077723 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
17 Hb_000256_110 0.3046873456 - - PREDICTED: aspartate aminotransferase, chloroplastic [Jatropha curcas]
18 Hb_033683_020 0.3063138772 - - hypothetical protein POPTR_1072s00200g [Populus trichocarpa]
19 Hb_003777_250 0.3095189085 - - PREDICTED: cellulose synthase A catalytic subunit 2 [UDP-forming]-like [Jatropha curcas]
20 Hb_002311_270 0.3101038882 - - PREDICTED: WD repeat-containing protein 43-like [Malus domestica]

Gene co-expression network

sample Hb_001054_010 Hb_001054_010 Hb_002411_020 Hb_002411_020 Hb_001054_010--Hb_002411_020 Hb_000915_190 Hb_000915_190 Hb_001054_010--Hb_000915_190 Hb_000157_110 Hb_000157_110 Hb_001054_010--Hb_000157_110 Hb_017098_010 Hb_017098_010 Hb_001054_010--Hb_017098_010 Hb_125431_010 Hb_125431_010 Hb_001054_010--Hb_125431_010 Hb_002400_150 Hb_002400_150 Hb_001054_010--Hb_002400_150 Hb_130250_010 Hb_130250_010 Hb_002411_020--Hb_130250_010 Hb_000890_110 Hb_000890_110 Hb_002411_020--Hb_000890_110 Hb_134813_010 Hb_134813_010 Hb_002411_020--Hb_134813_010 Hb_000300_680 Hb_000300_680 Hb_002411_020--Hb_000300_680 Hb_021313_010 Hb_021313_010 Hb_002411_020--Hb_021313_010 Hb_001814_060 Hb_001814_060 Hb_000915_190--Hb_001814_060 Hb_010171_010 Hb_010171_010 Hb_000915_190--Hb_010171_010 Hb_007793_030 Hb_007793_030 Hb_000915_190--Hb_007793_030 Hb_000659_090 Hb_000659_090 Hb_000915_190--Hb_000659_090 Hb_006237_030 Hb_006237_030 Hb_000915_190--Hb_006237_030 Hb_158144_020 Hb_158144_020 Hb_000157_110--Hb_158144_020 Hb_000300_310 Hb_000300_310 Hb_000157_110--Hb_000300_310 Hb_001390_020 Hb_001390_020 Hb_000157_110--Hb_001390_020 Hb_000157_110--Hb_000890_110 Hb_000613_260 Hb_000613_260 Hb_000157_110--Hb_000613_260 Hb_000014_190 Hb_000014_190 Hb_000157_110--Hb_000014_190 Hb_016760_010 Hb_016760_010 Hb_017098_010--Hb_016760_010 Hb_003777_250 Hb_003777_250 Hb_017098_010--Hb_003777_250 Hb_003632_030 Hb_003632_030 Hb_017098_010--Hb_003632_030 Hb_011616_020 Hb_011616_020 Hb_017098_010--Hb_011616_020 Hb_000529_140 Hb_000529_140 Hb_017098_010--Hb_000529_140 Hb_001080_150 Hb_001080_150 Hb_017098_010--Hb_001080_150 Hb_007973_010 Hb_007973_010 Hb_125431_010--Hb_007973_010 Hb_000771_090 Hb_000771_090 Hb_125431_010--Hb_000771_090 Hb_125431_010--Hb_017098_010 Hb_000656_090 Hb_000656_090 Hb_125431_010--Hb_000656_090 Hb_008447_030 Hb_008447_030 Hb_125431_010--Hb_008447_030 Hb_000084_200 Hb_000084_200 Hb_125431_010--Hb_000084_200 Hb_004339_030 Hb_004339_030 Hb_002400_150--Hb_004339_030 Hb_003581_290 Hb_003581_290 Hb_002400_150--Hb_003581_290 Hb_000256_110 Hb_000256_110 Hb_002400_150--Hb_000256_110 Hb_003057_010 Hb_003057_010 Hb_002400_150--Hb_003057_010 Hb_029879_060 Hb_029879_060 Hb_002400_150--Hb_029879_060 Hb_000008_350 Hb_000008_350 Hb_002400_150--Hb_000008_350
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.00860052 0.0158412 0.00375263 0.0200847
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.00849116 0 0 0.0211554 0.0574416

CAGE analysis