Hb_002411_020

Information

Type -
Description -
Location Contig2411: 25587-27582
Sequence    

Annotation

kegg
ID pop:POPTR_0001s07070g
description POPTRDRAFT_839944; hypothetical protein
nr
ID KDP40578.1
description hypothetical protein JCGZ_24577 [Jatropha curcas]
swissprot
ID P50846
description KHG/KDPG aldolase OS=Bacillus subtilis (strain 168) GN=kdgA PE=2 SV=1
trembl
ID A0A067L007
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24577 PE=4 SV=1
Gene Ontology
ID GO:0008675
description khg kdpg aldolase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25250: 25802-26271 , PASA_asmbl_25251: 26806-27562
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002411_020 0.0 - - hypothetical protein JCGZ_24577 [Jatropha curcas]
2 Hb_130250_010 0.2034616154 - - Putative disease resistance RGA4 [Gossypium arboreum]
3 Hb_000890_110 0.2061548618 - - PREDICTED: GTP-binding protein OBGC, chloroplastic [Populus euphratica]
4 Hb_134813_010 0.2166803592 - - aldo/keto reductase, putative [Ricinus communis]
5 Hb_000300_680 0.217127767 - - PREDICTED: uncharacterized protein LOC105632625 isoform X1 [Jatropha curcas]
6 Hb_001054_010 0.2178898134 - - hypothetical protein VITISV_011091 [Vitis vinifera]
7 Hb_021313_010 0.2184349193 - - hypothetical protein POPTR_0010s24380g [Populus trichocarpa]
8 Hb_009615_180 0.2230136029 - - lipoic acid synthetase, putative [Ricinus communis]
9 Hb_001163_020 0.2263048426 desease resistance Gene Name: ABC_trans_N ATP-binding cassette transporter, putative [Ricinus communis]
10 Hb_007002_010 0.2316964542 - - PREDICTED: dnaJ protein ERDJ3B [Jatropha curcas]
11 Hb_009393_140 0.233326864 - - PREDICTED: uncharacterized protein LOC105638053 isoform X1 [Jatropha curcas]
12 Hb_003226_190 0.2363127073 - - PREDICTED: blue-light photoreceptor PHR2 [Jatropha curcas]
13 Hb_182651_020 0.2377137162 - - alcohol dehydrogenase, putative [Ricinus communis]
14 Hb_000684_400 0.238038734 - - PREDICTED: uncharacterized protein LOC105642159 [Jatropha curcas]
15 Hb_000157_110 0.2386821104 - - hypothetical protein Csa_6G439410 [Cucumis sativus]
16 Hb_002305_010 0.239977955 - - S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis]
17 Hb_126917_010 0.2401170625 - - PREDICTED: uncharacterized protein LOC105646333 [Jatropha curcas]
18 Hb_000184_030 0.2423814797 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic [Jatropha curcas]
19 Hb_000402_170 0.2439868174 - - PREDICTED: glutamate--glyoxylate aminotransferase 2 [Jatropha curcas]
20 Hb_009620_060 0.2443680239 - - PREDICTED: acetylornithine aminotransferase, mitochondrial-like [Jatropha curcas]

Gene co-expression network

sample Hb_002411_020 Hb_002411_020 Hb_130250_010 Hb_130250_010 Hb_002411_020--Hb_130250_010 Hb_000890_110 Hb_000890_110 Hb_002411_020--Hb_000890_110 Hb_134813_010 Hb_134813_010 Hb_002411_020--Hb_134813_010 Hb_000300_680 Hb_000300_680 Hb_002411_020--Hb_000300_680 Hb_001054_010 Hb_001054_010 Hb_002411_020--Hb_001054_010 Hb_021313_010 Hb_021313_010 Hb_002411_020--Hb_021313_010 Hb_130250_010--Hb_134813_010 Hb_006775_110 Hb_006775_110 Hb_130250_010--Hb_006775_110 Hb_000230_170 Hb_000230_170 Hb_130250_010--Hb_000230_170 Hb_000997_320 Hb_000997_320 Hb_130250_010--Hb_000997_320 Hb_021428_010 Hb_021428_010 Hb_130250_010--Hb_021428_010 Hb_007002_010 Hb_007002_010 Hb_000890_110--Hb_007002_010 Hb_000683_080 Hb_000683_080 Hb_000890_110--Hb_000683_080 Hb_158144_020 Hb_158144_020 Hb_000890_110--Hb_158144_020 Hb_000038_020 Hb_000038_020 Hb_000890_110--Hb_000038_020 Hb_000352_220 Hb_000352_220 Hb_000890_110--Hb_000352_220 Hb_168031_020 Hb_168031_020 Hb_000890_110--Hb_168031_020 Hb_000035_020 Hb_000035_020 Hb_134813_010--Hb_000035_020 Hb_031330_020 Hb_031330_020 Hb_134813_010--Hb_031330_020 Hb_134813_010--Hb_000300_680 Hb_002305_010 Hb_002305_010 Hb_134813_010--Hb_002305_010 Hb_000866_050 Hb_000866_050 Hb_134813_010--Hb_000866_050 Hb_003778_020 Hb_003778_020 Hb_134813_010--Hb_003778_020 Hb_000616_030 Hb_000616_030 Hb_000300_680--Hb_000616_030 Hb_000300_680--Hb_031330_020 Hb_000329_080 Hb_000329_080 Hb_000300_680--Hb_000329_080 Hb_001916_150 Hb_001916_150 Hb_000300_680--Hb_001916_150 Hb_000163_110 Hb_000163_110 Hb_000300_680--Hb_000163_110 Hb_000975_050 Hb_000975_050 Hb_000300_680--Hb_000975_050 Hb_000915_190 Hb_000915_190 Hb_001054_010--Hb_000915_190 Hb_000157_110 Hb_000157_110 Hb_001054_010--Hb_000157_110 Hb_017098_010 Hb_017098_010 Hb_001054_010--Hb_017098_010 Hb_125431_010 Hb_125431_010 Hb_001054_010--Hb_125431_010 Hb_002400_150 Hb_002400_150 Hb_001054_010--Hb_002400_150 Hb_021313_010--Hb_000890_110 Hb_021313_010--Hb_158144_020 Hb_021313_010--Hb_000035_020 Hb_000058_080 Hb_000058_080 Hb_021313_010--Hb_000058_080 Hb_021313_010--Hb_000683_080 Hb_000390_030 Hb_000390_030 Hb_021313_010--Hb_000390_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0398315 0.117224 0.881079 1.77004 0.0932839 1.01041
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.802225 0.458717 0 1.11638 6.63563

CAGE analysis