Hb_021313_010

Information

Type -
Description -
Location Contig21313: 11631-16334
Sequence    

Annotation

kegg
ID pop:POPTR_0010s24380g
description POPTRDRAFT_822713; hypothetical protein
nr
ID XP_002315443.2
description hypothetical protein POPTR_0010s24380g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9HVY5
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s24380g PE=4 SV=2
Gene Ontology
ID GO:0009507
description rna recognition motif-containing protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_021313_010 0.0 - - hypothetical protein POPTR_0010s24380g [Populus trichocarpa]
2 Hb_000890_110 0.1434168517 - - PREDICTED: GTP-binding protein OBGC, chloroplastic [Populus euphratica]
3 Hb_158144_020 0.1441710473 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Vitis vinifera]
4 Hb_000035_020 0.1512057774 - - PREDICTED: omega-hydroxypalmitate O-feruloyl transferase [Jatropha curcas]
5 Hb_000058_080 0.1525822206 - - PREDICTED: phenylalanine--tRNA ligase, chloroplastic/mitochondrial [Jatropha curcas]
6 Hb_000683_080 0.1536282467 - - hypothetical protein EUGRSUZ_G013602, partial [Eucalyptus grandis]
7 Hb_000390_030 0.1544415209 - - hypothetical protein ZEAMMB73_364791 [Zea mays]
8 Hb_007002_010 0.1554704396 - - PREDICTED: dnaJ protein ERDJ3B [Jatropha curcas]
9 Hb_003226_190 0.1607365439 - - PREDICTED: blue-light photoreceptor PHR2 [Jatropha curcas]
10 Hb_000352_220 0.1653603185 - - PREDICTED: probable tyrosine--tRNA ligase, mitochondrial [Jatropha curcas]
11 Hb_000495_080 0.1655418075 - - Pentatricopeptide repeat (PPR-like) superfamily protein [Theobroma cacao]
12 Hb_010288_060 0.1687027173 - - PREDICTED: dnaJ protein ERDJ3B [Jatropha curcas]
13 Hb_001811_080 0.1771484703 - - PREDICTED: fructose-1,6-bisphosphatase, cytosolic [Jatropha curcas]
14 Hb_134813_010 0.1775690906 - - aldo/keto reductase, putative [Ricinus communis]
15 Hb_000866_050 0.1781225716 - - phosphate transporter [Manihot esculenta]
16 Hb_000529_140 0.1833263245 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000300_680 0.1856579242 - - PREDICTED: uncharacterized protein LOC105632625 isoform X1 [Jatropha curcas]
18 Hb_011053_020 0.1857831785 - - lipoic acid synthetase, putative [Ricinus communis]
19 Hb_001621_060 0.1865465812 - - PREDICTED: thylakoid lumenal 15 kDa protein 1, chloroplastic [Jatropha curcas]
20 Hb_004339_030 0.189108233 - - PREDICTED: 7-methylguanosine phosphate-specific 5'-nucleotidase A isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_021313_010 Hb_021313_010 Hb_000890_110 Hb_000890_110 Hb_021313_010--Hb_000890_110 Hb_158144_020 Hb_158144_020 Hb_021313_010--Hb_158144_020 Hb_000035_020 Hb_000035_020 Hb_021313_010--Hb_000035_020 Hb_000058_080 Hb_000058_080 Hb_021313_010--Hb_000058_080 Hb_000683_080 Hb_000683_080 Hb_021313_010--Hb_000683_080 Hb_000390_030 Hb_000390_030 Hb_021313_010--Hb_000390_030 Hb_007002_010 Hb_007002_010 Hb_000890_110--Hb_007002_010 Hb_000890_110--Hb_000683_080 Hb_000890_110--Hb_158144_020 Hb_000038_020 Hb_000038_020 Hb_000890_110--Hb_000038_020 Hb_000352_220 Hb_000352_220 Hb_000890_110--Hb_000352_220 Hb_168031_020 Hb_168031_020 Hb_000890_110--Hb_168031_020 Hb_158144_020--Hb_000058_080 Hb_000189_250 Hb_000189_250 Hb_158144_020--Hb_000189_250 Hb_000640_260 Hb_000640_260 Hb_158144_020--Hb_000640_260 Hb_000402_170 Hb_000402_170 Hb_158144_020--Hb_000402_170 Hb_166127_030 Hb_166127_030 Hb_158144_020--Hb_166127_030 Hb_134813_010 Hb_134813_010 Hb_000035_020--Hb_134813_010 Hb_031330_020 Hb_031330_020 Hb_000035_020--Hb_031330_020 Hb_000035_020--Hb_000683_080 Hb_000300_680 Hb_000300_680 Hb_000035_020--Hb_000300_680 Hb_011053_020 Hb_011053_020 Hb_000035_020--Hb_011053_020 Hb_000866_050 Hb_000866_050 Hb_000058_080--Hb_000866_050 Hb_001792_030 Hb_001792_030 Hb_000058_080--Hb_001792_030 Hb_003581_290 Hb_003581_290 Hb_000058_080--Hb_003581_290 Hb_000594_100 Hb_000594_100 Hb_000058_080--Hb_000594_100 Hb_003124_120 Hb_003124_120 Hb_000058_080--Hb_003124_120 Hb_000683_080--Hb_007002_010 Hb_000495_080 Hb_000495_080 Hb_000683_080--Hb_000495_080 Hb_000683_080--Hb_000352_220 Hb_003226_190 Hb_003226_190 Hb_000683_080--Hb_003226_190 Hb_000189_520 Hb_000189_520 Hb_000683_080--Hb_000189_520 Hb_000529_140 Hb_000529_140 Hb_000390_030--Hb_000529_140 Hb_010288_060 Hb_010288_060 Hb_000390_030--Hb_010288_060 Hb_010175_030 Hb_010175_030 Hb_000390_030--Hb_010175_030 Hb_008511_140 Hb_008511_140 Hb_000390_030--Hb_008511_140 Hb_009252_010 Hb_009252_010 Hb_000390_030--Hb_009252_010 Hb_000390_030--Hb_000495_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0922427 0.592408 2.01654 4.04198 0.543503 1.97247
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.18202 1.65926 2.47815 4.54297 15.9527

CAGE analysis