Hb_006237_030

Information

Type -
Description -
Location Contig6237: 111082-115796
Sequence    

Annotation

kegg
ID tcc:TCM_009549
description DNA/RNA polymerases superfamily protein
nr
ID XP_007044250.1
description DNA/RNA polymerases superfamily protein [Theobroma cacao]
swissprot
ID P31843
description RNA-directed DNA polymerase homolog OS=Oenothera berteroana PE=4 SV=1
trembl
ID A0A061E6T4
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_009549 PE=4 SV=1
Gene Ontology
ID GO:0005488
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006237_030 0.0 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
2 Hb_000659_090 0.0415855642 desease resistance Gene Name: NB-ARC leucine-rich repeat containing protein, putative [Ricinus communis]
3 Hb_095937_010 0.0738036338 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
4 Hb_145620_010 0.0824303991 - - hypothetical protein VITISV_019786 [Vitis vinifera]
5 Hb_000421_280 0.1365803925 - - polyprotein [Citrus endogenous pararetrovirus]
6 Hb_000811_090 0.178129734 - - hypothetical protein VITISV_043745 [Vitis vinifera]
7 Hb_007975_020 0.2305910487 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
8 Hb_001496_050 0.2309451882 - - yth domain-containing protein, putative [Ricinus communis]
9 Hb_000915_190 0.2392367227 - - -
10 Hb_025161_030 0.2479681447 - - PREDICTED: probable receptor-like protein kinase At1g67000 isoform X1 [Jatropha curcas]
11 Hb_188450_010 0.2494065334 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
12 Hb_009042_010 0.2494067015 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
13 Hb_000599_070 0.2502307993 - - PREDICTED: patellin-4-like [Jatropha curcas]
14 Hb_000968_070 0.2516444765 - - -
15 Hb_153665_010 0.2542600424 - - PREDICTED: uncharacterized protein LOC104245945 [Nicotiana sylvestris]
16 Hb_001320_020 0.2622373306 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103696607 [Phoenix dactylifera]
17 Hb_123951_010 0.2627430075 - - PREDICTED: uncharacterized protein LOC104894399 [Beta vulgaris subsp. vulgaris]
18 Hb_095399_010 0.2651700768 - - cytochrome b/f complex subunit IV [Sphagnum fimbriatum]
19 Hb_004762_020 0.265500762 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
20 Hb_005405_010 0.2668744862 - - -

Gene co-expression network

sample Hb_006237_030 Hb_006237_030 Hb_000659_090 Hb_000659_090 Hb_006237_030--Hb_000659_090 Hb_095937_010 Hb_095937_010 Hb_006237_030--Hb_095937_010 Hb_145620_010 Hb_145620_010 Hb_006237_030--Hb_145620_010 Hb_000421_280 Hb_000421_280 Hb_006237_030--Hb_000421_280 Hb_000811_090 Hb_000811_090 Hb_006237_030--Hb_000811_090 Hb_007975_020 Hb_007975_020 Hb_006237_030--Hb_007975_020 Hb_000659_090--Hb_095937_010 Hb_000659_090--Hb_145620_010 Hb_000659_090--Hb_000421_280 Hb_000659_090--Hb_007975_020 Hb_000659_090--Hb_000811_090 Hb_095937_010--Hb_145620_010 Hb_095937_010--Hb_000421_280 Hb_095937_010--Hb_000811_090 Hb_025161_030 Hb_025161_030 Hb_095937_010--Hb_025161_030 Hb_145620_010--Hb_000421_280 Hb_145620_010--Hb_000811_090 Hb_145620_010--Hb_025161_030 Hb_000421_280--Hb_000811_090 Hb_003915_030 Hb_003915_030 Hb_000421_280--Hb_003915_030 Hb_000907_050 Hb_000907_050 Hb_000811_090--Hb_000907_050 Hb_010964_030 Hb_010964_030 Hb_000811_090--Hb_010964_030 Hb_030987_010 Hb_030987_010 Hb_000811_090--Hb_030987_010 Hb_002255_080 Hb_002255_080 Hb_007975_020--Hb_002255_080 Hb_007975_020--Hb_095937_010 Hb_007975_020--Hb_145620_010 Hb_000649_090 Hb_000649_090 Hb_007975_020--Hb_000649_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.00339734 0 0.00421228
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00326585 0.0176796

CAGE analysis