Hb_002255_080

Information

Type -
Description -
Location Contig2255: 64562-66239
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002255_080 0.0 - - -
2 Hb_007975_020 0.1664273437 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
3 Hb_000117_150 0.1886528486 - - hypothetical protein RCOM_0079810 [Ricinus communis]
4 Hb_001652_070 0.2303589715 - - PREDICTED: uncharacterized protein LOC103439285 [Malus domestica]
5 Hb_001341_190 0.2438895459 - - PREDICTED: isovaleryl-CoA dehydrogenase, mitochondrial [Jatropha curcas]
6 Hb_001737_040 0.2482241042 - - PREDICTED: uncharacterized protein LOC104100193 [Nicotiana tomentosiformis]
7 Hb_002311_260 0.2492850191 - - PREDICTED: WD repeat-containing protein 43 [Jatropha curcas]
8 Hb_001320_020 0.2531017051 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103696607 [Phoenix dactylifera]
9 Hb_165396_010 0.2540204195 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
10 Hb_002542_050 0.2544822587 - - -
11 Hb_002157_060 0.2569645649 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 9 [Jatropha curcas]
12 Hb_003983_010 0.2570782923 - - serine/threonine-protein kinase bri1, putative [Ricinus communis]
13 Hb_002042_040 0.2585043592 - - hypothetical protein POPTR_0013s02440g [Populus trichocarpa]
14 Hb_000009_430 0.2619891983 - - conserved hypothetical protein [Ricinus communis]
15 Hb_006807_010 0.2619931884 - - hypothetical protein JCGZ_20881 [Jatropha curcas]
16 Hb_000946_130 0.2647491214 - - PREDICTED: uncharacterized protein LOC104602430 [Nelumbo nucifera]
17 Hb_003450_010 0.2672311328 - - -
18 Hb_002311_270 0.2685536661 - - PREDICTED: WD repeat-containing protein 43-like [Malus domestica]
19 Hb_094437_030 0.2704807056 - - hypothetical protein AMTR_s00420p00013340 [Amborella trichopoda]
20 Hb_000659_090 0.2727662497 desease resistance Gene Name: NB-ARC leucine-rich repeat containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_002255_080 Hb_002255_080 Hb_007975_020 Hb_007975_020 Hb_002255_080--Hb_007975_020 Hb_000117_150 Hb_000117_150 Hb_002255_080--Hb_000117_150 Hb_001652_070 Hb_001652_070 Hb_002255_080--Hb_001652_070 Hb_001341_190 Hb_001341_190 Hb_002255_080--Hb_001341_190 Hb_001737_040 Hb_001737_040 Hb_002255_080--Hb_001737_040 Hb_002311_260 Hb_002311_260 Hb_002255_080--Hb_002311_260 Hb_000659_090 Hb_000659_090 Hb_007975_020--Hb_000659_090 Hb_095937_010 Hb_095937_010 Hb_007975_020--Hb_095937_010 Hb_006237_030 Hb_006237_030 Hb_007975_020--Hb_006237_030 Hb_145620_010 Hb_145620_010 Hb_007975_020--Hb_145620_010 Hb_000649_090 Hb_000649_090 Hb_007975_020--Hb_000649_090 Hb_016835_020 Hb_016835_020 Hb_000117_150--Hb_016835_020 Hb_025668_020 Hb_025668_020 Hb_000117_150--Hb_025668_020 Hb_000009_430 Hb_000009_430 Hb_000117_150--Hb_000009_430 Hb_001597_090 Hb_001597_090 Hb_000117_150--Hb_001597_090 Hb_104835_010 Hb_104835_010 Hb_000117_150--Hb_104835_010 Hb_002639_010 Hb_002639_010 Hb_001652_070--Hb_002639_010 Hb_001652_070--Hb_001341_190 Hb_002456_020 Hb_002456_020 Hb_001652_070--Hb_002456_020 Hb_001652_070--Hb_000117_150 Hb_022819_010 Hb_022819_010 Hb_001652_070--Hb_022819_010 Hb_000875_090 Hb_000875_090 Hb_001341_190--Hb_000875_090 Hb_001341_190--Hb_007975_020 Hb_007718_020 Hb_007718_020 Hb_001341_190--Hb_007718_020 Hb_001341_190--Hb_000659_090 Hb_001971_050 Hb_001971_050 Hb_001737_040--Hb_001971_050 Hb_000714_120 Hb_000714_120 Hb_001737_040--Hb_000714_120 Hb_002888_050 Hb_002888_050 Hb_001737_040--Hb_002888_050 Hb_000392_490 Hb_000392_490 Hb_001737_040--Hb_000392_490 Hb_005332_050 Hb_005332_050 Hb_001737_040--Hb_005332_050 Hb_002110_090 Hb_002110_090 Hb_001737_040--Hb_002110_090 Hb_060658_010 Hb_060658_010 Hb_002311_260--Hb_060658_010 Hb_182651_020 Hb_182651_020 Hb_002311_260--Hb_182651_020 Hb_000019_010 Hb_000019_010 Hb_002311_260--Hb_000019_010 Hb_003938_110 Hb_003938_110 Hb_002311_260--Hb_003938_110 Hb_002311_260--Hb_001737_040 Hb_000366_030 Hb_000366_030 Hb_002311_260--Hb_000366_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.104173 0 1.00878 0 0.339446
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.944579 1.23754

CAGE analysis