Hb_095937_010

Information

Type -
Description -
Location Contig95937: 974-2271
Sequence    

Annotation

kegg
ID pop:POPTR_0011s01952g
description hypothetical protein
nr
ID XP_006377206.1
description hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U5FUS7
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s01952g PE=4 SV=1
Gene Ontology
ID GO:0003676
description zinc finger protein gis2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_095937_010 0.0 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
2 Hb_145620_010 0.0422387721 - - hypothetical protein VITISV_019786 [Vitis vinifera]
3 Hb_006237_030 0.0738036338 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
4 Hb_000659_090 0.0775328936 desease resistance Gene Name: NB-ARC leucine-rich repeat containing protein, putative [Ricinus communis]
5 Hb_000421_280 0.1253418468 - - polyprotein [Citrus endogenous pararetrovirus]
6 Hb_000811_090 0.1280372795 - - hypothetical protein VITISV_043745 [Vitis vinifera]
7 Hb_025161_030 0.1971689003 - - PREDICTED: probable receptor-like protein kinase At1g67000 isoform X1 [Jatropha curcas]
8 Hb_001496_050 0.2142356475 - - yth domain-containing protein, putative [Ricinus communis]
9 Hb_007975_020 0.2156916417 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
10 Hb_001452_150 0.2180479227 - - PREDICTED: uncharacterized protein LOC104879858 [Vitis vinifera]
11 Hb_003427_040 0.2182229553 - - PREDICTED: uncharacterized protein LOC105634770 [Jatropha curcas]
12 Hb_009826_010 0.2184027166 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
13 Hb_004274_010 0.2189294171 - - PREDICTED: uncharacterized protein LOC104451199 [Eucalyptus grandis]
14 Hb_000968_070 0.2225959665 - - -
15 Hb_024248_010 0.2326244457 - - PREDICTED: uncharacterized protein LOC105779006 [Gossypium raimondii]
16 Hb_000029_220 0.2359055156 - - PREDICTED: pre-mRNA-splicing factor SLU7-A-like [Jatropha curcas]
17 Hb_011476_010 0.2383275545 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
18 Hb_001401_030 0.2475913427 - - PREDICTED: uncharacterized protein LOC105649622 [Jatropha curcas]
19 Hb_003186_050 0.2476469393 - - -
20 Hb_007793_030 0.2500868567 - - OSJNBa0074B10.6 [Oryza sativa Japonica Group]

Gene co-expression network

sample Hb_095937_010 Hb_095937_010 Hb_145620_010 Hb_145620_010 Hb_095937_010--Hb_145620_010 Hb_006237_030 Hb_006237_030 Hb_095937_010--Hb_006237_030 Hb_000659_090 Hb_000659_090 Hb_095937_010--Hb_000659_090 Hb_000421_280 Hb_000421_280 Hb_095937_010--Hb_000421_280 Hb_000811_090 Hb_000811_090 Hb_095937_010--Hb_000811_090 Hb_025161_030 Hb_025161_030 Hb_095937_010--Hb_025161_030 Hb_145620_010--Hb_006237_030 Hb_145620_010--Hb_000659_090 Hb_145620_010--Hb_000421_280 Hb_145620_010--Hb_000811_090 Hb_145620_010--Hb_025161_030 Hb_006237_030--Hb_000659_090 Hb_006237_030--Hb_000421_280 Hb_006237_030--Hb_000811_090 Hb_007975_020 Hb_007975_020 Hb_006237_030--Hb_007975_020 Hb_000659_090--Hb_000421_280 Hb_000659_090--Hb_007975_020 Hb_000659_090--Hb_000811_090 Hb_000421_280--Hb_000811_090 Hb_003915_030 Hb_003915_030 Hb_000421_280--Hb_003915_030 Hb_000907_050 Hb_000907_050 Hb_000811_090--Hb_000907_050 Hb_010964_030 Hb_010964_030 Hb_000811_090--Hb_010964_030 Hb_030987_010 Hb_030987_010 Hb_000811_090--Hb_030987_010 Hb_094484_010 Hb_094484_010 Hb_025161_030--Hb_094484_010 Hb_010721_040 Hb_010721_040 Hb_025161_030--Hb_010721_040 Hb_128750_010 Hb_128750_010 Hb_025161_030--Hb_128750_010 Hb_102761_010 Hb_102761_010 Hb_025161_030--Hb_102761_010 Hb_004530_010 Hb_004530_010 Hb_025161_030--Hb_004530_010 Hb_000415_080 Hb_000415_080 Hb_025161_030--Hb_000415_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.0273744 0 0.0189032
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0258826 0.133616

CAGE analysis