Hb_000811_090

Information

Type -
Description -
Location Contig811: 100423-106744
Sequence    

Annotation

kegg
ID csv:101212001
description uncharacterized LOC101212001
nr
ID CAN63777.1
description hypothetical protein VITISV_043745 [Vitis vinifera]
swissprot
ID P10978
description Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1
trembl
ID A5BS59
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_043745 PE=4 SV=1
Gene Ontology
ID GO:0046872
description gag-pol polyprotein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000811_090 0.0 - - hypothetical protein VITISV_043745 [Vitis vinifera]
2 Hb_000421_280 0.1201906121 - - polyprotein [Citrus endogenous pararetrovirus]
3 Hb_095937_010 0.1280372795 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
4 Hb_145620_010 0.1347472026 - - hypothetical protein VITISV_019786 [Vitis vinifera]
5 Hb_000907_050 0.1560807257 - - -
6 Hb_010964_030 0.1651884174 - - PREDICTED: uncharacterized protein LOC105647958 [Jatropha curcas]
7 Hb_030987_010 0.1715653828 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
8 Hb_009826_010 0.1717412322 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
9 Hb_001401_030 0.1723584056 - - PREDICTED: uncharacterized protein LOC105649622 [Jatropha curcas]
10 Hb_003427_040 0.1725782448 - - PREDICTED: uncharacterized protein LOC105634770 [Jatropha curcas]
11 Hb_024248_010 0.1762874039 - - PREDICTED: uncharacterized protein LOC105779006 [Gossypium raimondii]
12 Hb_006237_030 0.178129734 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
13 Hb_001452_150 0.1792095176 - - PREDICTED: uncharacterized protein LOC104879858 [Vitis vinifera]
14 Hb_003772_010 0.1818909828 - - polyprotein [Oryza australiensis]
15 Hb_062192_050 0.1869047953 - - -
16 Hb_004274_010 0.1891470878 - - PREDICTED: uncharacterized protein LOC104451199 [Eucalyptus grandis]
17 Hb_000659_090 0.1988065511 desease resistance Gene Name: NB-ARC leucine-rich repeat containing protein, putative [Ricinus communis]
18 Hb_005676_020 0.2027293873 transcription factor TF Family: ERF hypothetical protein RCOM_1314900 [Ricinus communis]
19 Hb_005405_010 0.2043696516 - - -
20 Hb_004762_020 0.2054699853 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]

Gene co-expression network

sample Hb_000811_090 Hb_000811_090 Hb_000421_280 Hb_000421_280 Hb_000811_090--Hb_000421_280 Hb_095937_010 Hb_095937_010 Hb_000811_090--Hb_095937_010 Hb_145620_010 Hb_145620_010 Hb_000811_090--Hb_145620_010 Hb_000907_050 Hb_000907_050 Hb_000811_090--Hb_000907_050 Hb_010964_030 Hb_010964_030 Hb_000811_090--Hb_010964_030 Hb_030987_010 Hb_030987_010 Hb_000811_090--Hb_030987_010 Hb_000421_280--Hb_145620_010 Hb_000421_280--Hb_095937_010 Hb_006237_030 Hb_006237_030 Hb_000421_280--Hb_006237_030 Hb_000659_090 Hb_000659_090 Hb_000421_280--Hb_000659_090 Hb_003915_030 Hb_003915_030 Hb_000421_280--Hb_003915_030 Hb_095937_010--Hb_145620_010 Hb_095937_010--Hb_006237_030 Hb_095937_010--Hb_000659_090 Hb_025161_030 Hb_025161_030 Hb_095937_010--Hb_025161_030 Hb_145620_010--Hb_006237_030 Hb_145620_010--Hb_000659_090 Hb_145620_010--Hb_025161_030 Hb_003772_010 Hb_003772_010 Hb_000907_050--Hb_003772_010 Hb_001401_030 Hb_001401_030 Hb_000907_050--Hb_001401_030 Hb_024248_010 Hb_024248_010 Hb_000907_050--Hb_024248_010 Hb_062192_050 Hb_062192_050 Hb_000907_050--Hb_062192_050 Hb_000907_050--Hb_030987_010 Hb_000907_050--Hb_010964_030 Hb_010964_030--Hb_030987_010 Hb_010964_030--Hb_003772_010 Hb_001981_020 Hb_001981_020 Hb_010964_030--Hb_001981_020 Hb_186580_020 Hb_186580_020 Hb_010964_030--Hb_186580_020 Hb_027970_010 Hb_027970_010 Hb_010964_030--Hb_027970_010 Hb_030987_010--Hb_003772_010 Hb_098361_010 Hb_098361_010 Hb_030987_010--Hb_098361_010 Hb_000581_070 Hb_000581_070 Hb_030987_010--Hb_000581_070 Hb_007668_030 Hb_007668_030 Hb_030987_010--Hb_007668_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.0086913 0 0.00529183
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0171457 0.0923445

CAGE analysis