Hb_000421_280

Information

Type -
Description -
Location Contig421: 217030-223313
Sequence    

Annotation

kegg
ID cam:101511883
description genome polyprotein-like
nr
ID YP_008992013.1
description polyprotein [Citrus endogenous pararetrovirus]
swissprot
ID Q91DM0
description Genome polyprotein OS=Petunia vein clearing virus (isolate Shepherd) PE=3 SV=1
trembl
ID V9QF33
description Polyprotein OS=Citrus endogenous pararetrovirus PE=4 SV=1
Gene Ontology
ID GO:0003676
description polyprotein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000421_280 0.0 - - polyprotein [Citrus endogenous pararetrovirus]
2 Hb_145620_010 0.1008035176 - - hypothetical protein VITISV_019786 [Vitis vinifera]
3 Hb_000811_090 0.1201906121 - - hypothetical protein VITISV_043745 [Vitis vinifera]
4 Hb_095937_010 0.1253418468 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
5 Hb_006237_030 0.1365803925 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
6 Hb_000659_090 0.1687178683 desease resistance Gene Name: NB-ARC leucine-rich repeat containing protein, putative [Ricinus communis]
7 Hb_003915_030 0.1913086847 - - PREDICTED: uncharacterized protein LOC104901272 [Beta vulgaris subsp. vulgaris]
8 Hb_022599_010 0.2061825437 - - Uncharacterized protein TCM_010507 [Theobroma cacao]
9 Hb_005352_010 0.206414988 - - -
10 Hb_004762_020 0.2127518064 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
11 Hb_001401_030 0.2159688901 - - PREDICTED: uncharacterized protein LOC105649622 [Jatropha curcas]
12 Hb_027522_020 0.2164309344 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
13 Hb_005405_010 0.2165552549 - - -
14 Hb_123951_010 0.2174767398 - - PREDICTED: uncharacterized protein LOC104894399 [Beta vulgaris subsp. vulgaris]
15 Hb_000907_050 0.2220003726 - - -
16 Hb_024248_010 0.2233361089 - - PREDICTED: uncharacterized protein LOC105779006 [Gossypium raimondii]
17 Hb_005676_020 0.2245910121 transcription factor TF Family: ERF hypothetical protein RCOM_1314900 [Ricinus communis]
18 Hb_000100_120 0.2249859926 - - RNA-directed DNA polymerase (Reverse transcriptase); Chromo; Zinc finger, CCHC-type; Peptidase aspartic, active site; Polynucleotidyl transferase, Ribonuclease H fold [Medicago truncatula]
19 Hb_003772_010 0.2259735529 - - polyprotein [Oryza australiensis]
20 Hb_006040_160 0.2269070855 - - ribosomal protein S12 (mitochondrion) [Hevea brasiliensis]

Gene co-expression network

sample Hb_000421_280 Hb_000421_280 Hb_145620_010 Hb_145620_010 Hb_000421_280--Hb_145620_010 Hb_000811_090 Hb_000811_090 Hb_000421_280--Hb_000811_090 Hb_095937_010 Hb_095937_010 Hb_000421_280--Hb_095937_010 Hb_006237_030 Hb_006237_030 Hb_000421_280--Hb_006237_030 Hb_000659_090 Hb_000659_090 Hb_000421_280--Hb_000659_090 Hb_003915_030 Hb_003915_030 Hb_000421_280--Hb_003915_030 Hb_145620_010--Hb_095937_010 Hb_145620_010--Hb_006237_030 Hb_145620_010--Hb_000659_090 Hb_145620_010--Hb_000811_090 Hb_025161_030 Hb_025161_030 Hb_145620_010--Hb_025161_030 Hb_000811_090--Hb_095937_010 Hb_000907_050 Hb_000907_050 Hb_000811_090--Hb_000907_050 Hb_010964_030 Hb_010964_030 Hb_000811_090--Hb_010964_030 Hb_030987_010 Hb_030987_010 Hb_000811_090--Hb_030987_010 Hb_095937_010--Hb_006237_030 Hb_095937_010--Hb_000659_090 Hb_095937_010--Hb_025161_030 Hb_006237_030--Hb_000659_090 Hb_006237_030--Hb_000811_090 Hb_007975_020 Hb_007975_020 Hb_006237_030--Hb_007975_020 Hb_000659_090--Hb_007975_020 Hb_000659_090--Hb_000811_090 Hb_006040_010 Hb_006040_010 Hb_003915_030--Hb_006040_010 Hb_027522_020 Hb_027522_020 Hb_003915_030--Hb_027522_020 Hb_145745_010 Hb_145745_010 Hb_003915_030--Hb_145745_010 Hb_006040_020 Hb_006040_020 Hb_003915_030--Hb_006040_020 Hb_001490_020 Hb_001490_020 Hb_003915_030--Hb_001490_020 Hb_007645_020 Hb_007645_020 Hb_003915_030--Hb_007645_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.00239478 0 0.00296298
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00232342 0.0252754

CAGE analysis