Hb_007975_020

Information

Type -
Description -
Location Contig7975: 48915-51920
Sequence    

Annotation

kegg
ID tcc:TCM_009549
description DNA/RNA polymerases superfamily protein
nr
ID XP_009787832.1
description PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
swissprot
ID P04323
description Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster GN=pol PE=3 SV=1
trembl
ID A0A061E6T4
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_009549 PE=4 SV=1
Gene Ontology
ID GO:0005488
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007975_020 0.0 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
2 Hb_002255_080 0.1664273437 - - -
3 Hb_000659_090 0.1908920182 desease resistance Gene Name: NB-ARC leucine-rich repeat containing protein, putative [Ricinus communis]
4 Hb_095937_010 0.2156916417 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
5 Hb_006237_030 0.2305910487 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
6 Hb_145620_010 0.2330714787 - - hypothetical protein VITISV_019786 [Vitis vinifera]
7 Hb_000649_090 0.2360249731 - - unnamed protein product [Vitis vinifera]
8 Hb_000946_130 0.2375231593 - - PREDICTED: uncharacterized protein LOC104602430 [Nelumbo nucifera]
9 Hb_001341_190 0.2431128901 - - PREDICTED: isovaleryl-CoA dehydrogenase, mitochondrial [Jatropha curcas]
10 Hb_169960_010 0.2441116787 - - -
11 Hb_025161_030 0.246650844 - - PREDICTED: probable receptor-like protein kinase At1g67000 isoform X1 [Jatropha curcas]
12 Hb_051410_010 0.2474587788 - - PREDICTED: uncharacterized protein LOC103401813 [Malus domestica]
13 Hb_003688_120 0.2480117722 - - PREDICTED: uncharacterized protein LOC105350793 [Fragaria vesca subsp. vesca]
14 Hb_000117_150 0.2506389672 - - hypothetical protein RCOM_0079810 [Ricinus communis]
15 Hb_000914_010 0.2517431936 - - hypothetical protein POPTR_0025s00760g [Populus trichocarpa]
16 Hb_014102_010 0.2525295118 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
17 Hb_165396_010 0.2622274346 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
18 Hb_002542_050 0.2642097629 - - -
19 Hb_011476_010 0.2673962827 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
20 Hb_005207_040 0.2678252625 - - PREDICTED: zinc finger Ran-binding domain-containing protein 2-like [Cicer arietinum]

Gene co-expression network

sample Hb_007975_020 Hb_007975_020 Hb_002255_080 Hb_002255_080 Hb_007975_020--Hb_002255_080 Hb_000659_090 Hb_000659_090 Hb_007975_020--Hb_000659_090 Hb_095937_010 Hb_095937_010 Hb_007975_020--Hb_095937_010 Hb_006237_030 Hb_006237_030 Hb_007975_020--Hb_006237_030 Hb_145620_010 Hb_145620_010 Hb_007975_020--Hb_145620_010 Hb_000649_090 Hb_000649_090 Hb_007975_020--Hb_000649_090 Hb_000117_150 Hb_000117_150 Hb_002255_080--Hb_000117_150 Hb_001652_070 Hb_001652_070 Hb_002255_080--Hb_001652_070 Hb_001341_190 Hb_001341_190 Hb_002255_080--Hb_001341_190 Hb_001737_040 Hb_001737_040 Hb_002255_080--Hb_001737_040 Hb_002311_260 Hb_002311_260 Hb_002255_080--Hb_002311_260 Hb_000659_090--Hb_006237_030 Hb_000659_090--Hb_095937_010 Hb_000659_090--Hb_145620_010 Hb_000421_280 Hb_000421_280 Hb_000659_090--Hb_000421_280 Hb_000811_090 Hb_000811_090 Hb_000659_090--Hb_000811_090 Hb_095937_010--Hb_145620_010 Hb_095937_010--Hb_006237_030 Hb_095937_010--Hb_000421_280 Hb_095937_010--Hb_000811_090 Hb_025161_030 Hb_025161_030 Hb_095937_010--Hb_025161_030 Hb_006237_030--Hb_145620_010 Hb_006237_030--Hb_000421_280 Hb_006237_030--Hb_000811_090 Hb_145620_010--Hb_000421_280 Hb_145620_010--Hb_000811_090 Hb_145620_010--Hb_025161_030 Hb_051410_010 Hb_051410_010 Hb_000649_090--Hb_051410_010 Hb_014102_010 Hb_014102_010 Hb_000649_090--Hb_014102_010 Hb_003688_120 Hb_003688_120 Hb_000649_090--Hb_003688_120 Hb_000914_010 Hb_000914_010 Hb_000649_090--Hb_000914_010 Hb_000806_010 Hb_000806_010 Hb_000649_090--Hb_000806_010 Hb_169960_010 Hb_169960_010 Hb_000649_090--Hb_169960_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.0201569 0 0.00620217
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0100573 0.0269835

CAGE analysis