Hb_169960_010

Information

Type -
Description -
Location Contig169960: 95-656
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_169960_010 0.0 - - -
2 Hb_000014_200 0.0755916097 - - PREDICTED: uncharacterized protein LOC105775355 [Gossypium raimondii]
3 Hb_005207_040 0.0894750576 - - PREDICTED: zinc finger Ran-binding domain-containing protein 2-like [Cicer arietinum]
4 Hb_003688_120 0.0981508876 - - PREDICTED: uncharacterized protein LOC105350793 [Fragaria vesca subsp. vesca]
5 Hb_014102_010 0.1197163171 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
6 Hb_001144_030 0.1198219675 - - hypothetical protein CICLE_v10023280mg, partial [Citrus clementina]
7 Hb_002559_020 0.1253366238 transcription factor TF Family: TUB -
8 Hb_000649_090 0.1325530032 - - unnamed protein product [Vitis vinifera]
9 Hb_012077_010 0.1416549088 desease resistance Gene Name: NB-ARC Disease resistance protein RGA2, putative [Ricinus communis]
10 Hb_002157_060 0.1493755569 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 9 [Jatropha curcas]
11 Hb_000946_130 0.1550631957 - - PREDICTED: uncharacterized protein LOC104602430 [Nelumbo nucifera]
12 Hb_000300_650 0.1583442882 - - PREDICTED: arabinogalactan peptide 13-like [Jatropha curcas]
13 Hb_060783_010 0.1589638107 - - Chloride channel protein CLC-c [Populus trichocarpa]
14 Hb_002042_040 0.1666451533 - - hypothetical protein POPTR_0013s02440g [Populus trichocarpa]
15 Hb_165396_010 0.1733056403 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
16 Hb_002542_050 0.177828056 - - -
17 Hb_000806_010 0.1824584726 - - PREDICTED: hevamine-A-like [Jatropha curcas]
18 Hb_022973_010 0.1826923655 - - PREDICTED: trans-resveratrol di-O-methyltransferase-like [Jatropha curcas]
19 Hb_036790_050 0.1829908728 - - PREDICTED: peroxidase 12-like [Jatropha curcas]
20 Hb_051410_010 0.189302865 - - PREDICTED: uncharacterized protein LOC103401813 [Malus domestica]

Gene co-expression network

sample Hb_169960_010 Hb_169960_010 Hb_000014_200 Hb_000014_200 Hb_169960_010--Hb_000014_200 Hb_005207_040 Hb_005207_040 Hb_169960_010--Hb_005207_040 Hb_003688_120 Hb_003688_120 Hb_169960_010--Hb_003688_120 Hb_014102_010 Hb_014102_010 Hb_169960_010--Hb_014102_010 Hb_001144_030 Hb_001144_030 Hb_169960_010--Hb_001144_030 Hb_002559_020 Hb_002559_020 Hb_169960_010--Hb_002559_020 Hb_000014_200--Hb_001144_030 Hb_000014_200--Hb_005207_040 Hb_000014_200--Hb_002559_020 Hb_000300_650 Hb_000300_650 Hb_000014_200--Hb_000300_650 Hb_060783_010 Hb_060783_010 Hb_000014_200--Hb_060783_010 Hb_005207_040--Hb_002559_020 Hb_005207_040--Hb_003688_120 Hb_005207_040--Hb_014102_010 Hb_005207_040--Hb_060783_010 Hb_005207_040--Hb_001144_030 Hb_003688_120--Hb_014102_010 Hb_000649_090 Hb_000649_090 Hb_003688_120--Hb_000649_090 Hb_000806_010 Hb_000806_010 Hb_003688_120--Hb_000806_010 Hb_003688_120--Hb_002559_020 Hb_014102_010--Hb_000806_010 Hb_014102_010--Hb_000649_090 Hb_014102_010--Hb_002559_020 Hb_001144_030--Hb_002559_020 Hb_001144_030--Hb_060783_010 Hb_036790_050 Hb_036790_050 Hb_001144_030--Hb_036790_050 Hb_002559_020--Hb_060783_010 Hb_002559_020--Hb_036790_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.275151 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.102192 0.223041

CAGE analysis