Hb_060783_010

Information

Type -
Description -
Location Contig60783: 14-878
Sequence    

Annotation

kegg
ID pop:POPTR_0003s00940g
description Chloride channel protein CLC-c
nr
ID XP_006385193.1
description Chloride channel protein CLC-c [Populus trichocarpa]
swissprot
ID Q96282
description Chloride channel protein CLC-c OS=Arabidopsis thaliana GN=CLC-C PE=1 SV=1
trembl
ID U5GHL4
description Chloride channel protein OS=Populus trichocarpa GN=POPTR_0003s00940g PE=3 SV=1
Gene Ontology
ID GO:0016020
description chloride channel protein clc-c-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_060783_010 0.0 - - Chloride channel protein CLC-c [Populus trichocarpa]
2 Hb_036790_050 0.0271482356 - - PREDICTED: peroxidase 12-like [Jatropha curcas]
3 Hb_002559_020 0.0343435474 transcription factor TF Family: TUB -
4 Hb_005207_040 0.0802680672 - - PREDICTED: zinc finger Ran-binding domain-containing protein 2-like [Cicer arietinum]
5 Hb_001144_030 0.0963331815 - - hypothetical protein CICLE_v10023280mg, partial [Citrus clementina]
6 Hb_003688_120 0.136785251 - - PREDICTED: uncharacterized protein LOC105350793 [Fragaria vesca subsp. vesca]
7 Hb_014102_010 0.1441146243 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
8 Hb_184074_010 0.1510884631 - - PREDICTED: uncharacterized protein LOC105639054 [Jatropha curcas]
9 Hb_000959_110 0.1568695236 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 13 [Vitis vinifera]
10 Hb_000014_200 0.1583870617 - - PREDICTED: uncharacterized protein LOC105775355 [Gossypium raimondii]
11 Hb_004713_040 0.1586430115 - - hypothetical protein JCGZ_22567 [Jatropha curcas]
12 Hb_169960_010 0.1589638107 - - -
13 Hb_005056_040 0.1640426221 - - hypothetical protein POPTR_0007s14730g [Populus trichocarpa]
14 Hb_006755_030 0.1681101545 - - BURP domain-containing protein, putative [Theobroma cacao]
15 Hb_188281_020 0.1682853706 - - PREDICTED: uncharacterized protein LOC105629522 [Jatropha curcas]
16 Hb_012077_010 0.1685808648 desease resistance Gene Name: NB-ARC Disease resistance protein RGA2, putative [Ricinus communis]
17 Hb_000806_010 0.1697357161 - - PREDICTED: hevamine-A-like [Jatropha curcas]
18 Hb_001019_030 0.1729334763 - - PREDICTED: 4-coumarate--CoA ligase 1-like [Jatropha curcas]
19 Hb_002965_110 0.1757698233 - - hypothetical protein POPTR_0010s15040g [Populus trichocarpa]
20 Hb_105885_010 0.1767946919 - - PREDICTED: uncharacterized protein LOC103441690 [Malus domestica]

Gene co-expression network

sample Hb_060783_010 Hb_060783_010 Hb_036790_050 Hb_036790_050 Hb_060783_010--Hb_036790_050 Hb_002559_020 Hb_002559_020 Hb_060783_010--Hb_002559_020 Hb_005207_040 Hb_005207_040 Hb_060783_010--Hb_005207_040 Hb_001144_030 Hb_001144_030 Hb_060783_010--Hb_001144_030 Hb_003688_120 Hb_003688_120 Hb_060783_010--Hb_003688_120 Hb_014102_010 Hb_014102_010 Hb_060783_010--Hb_014102_010 Hb_036790_050--Hb_002559_020 Hb_036790_050--Hb_001144_030 Hb_036790_050--Hb_005207_040 Hb_188281_020 Hb_188281_020 Hb_036790_050--Hb_188281_020 Hb_105885_010 Hb_105885_010 Hb_036790_050--Hb_105885_010 Hb_002559_020--Hb_005207_040 Hb_002559_020--Hb_001144_030 Hb_002559_020--Hb_003688_120 Hb_002559_020--Hb_014102_010 Hb_005207_040--Hb_003688_120 Hb_005207_040--Hb_014102_010 Hb_169960_010 Hb_169960_010 Hb_005207_040--Hb_169960_010 Hb_005207_040--Hb_001144_030 Hb_000014_200 Hb_000014_200 Hb_001144_030--Hb_000014_200 Hb_001144_030--Hb_169960_010 Hb_003688_120--Hb_014102_010 Hb_000649_090 Hb_000649_090 Hb_003688_120--Hb_000649_090 Hb_000806_010 Hb_000806_010 Hb_003688_120--Hb_000806_010 Hb_003688_120--Hb_169960_010 Hb_014102_010--Hb_000806_010 Hb_014102_010--Hb_000649_090 Hb_014102_010--Hb_169960_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.179721 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0196417 0.0982421

CAGE analysis