Hb_105885_010

Information

Type -
Description -
Location Contig105885: 53-513
Sequence    

Annotation

kegg
ID mdm:103441690
description uncharacterized LOC103441690
nr
ID XP_008378642.1
description PREDICTED: uncharacterized protein LOC103441690 [Malus domestica]
swissprot
ID -
description -
trembl
ID A0A061EGC0
description Retrotransposon protein, putative OS=Theobroma cacao GN=TCM_019329 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_105885_010 0.0 - - PREDICTED: uncharacterized protein LOC103441690 [Malus domestica]
2 Hb_002073_160 0.0322383385 - - hypothetical protein JCGZ_21740 [Jatropha curcas]
3 Hb_001174_040 0.1021269906 - - -
4 Hb_188281_020 0.1136744958 - - PREDICTED: uncharacterized protein LOC105629522 [Jatropha curcas]
5 Hb_001210_120 0.1143454343 - - hypothetical protein JCGZ_06226 [Jatropha curcas]
6 Hb_002031_020 0.126193447 - - hypothetical protein JCGZ_19971 [Jatropha curcas]
7 Hb_025557_080 0.1332643635 transcription factor TF Family: zf-HD -
8 Hb_133926_010 0.1400894855 - - hypothetical protein JCGZ_08917 [Jatropha curcas]
9 Hb_025557_070 0.1421720028 transcription factor TF Family: zf-HD hypothetical protein JCGZ_11626 [Jatropha curcas]
10 Hb_000581_010 0.1425677519 - - PREDICTED: protein NRT1/ PTR FAMILY 5.6-like [Jatropha curcas]
11 Hb_000594_010 0.1439861297 - - PREDICTED: lysine histidine transporter-like 6 isoform X3 [Populus euphratica]
12 Hb_000155_130 0.1443086834 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000480_020 0.144521299 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000617_070 0.1452519707 - - hypothetical protein POPTR_0005s02420g [Populus trichocarpa]
15 Hb_000487_350 0.1454992251 - - conserved hypothetical protein [Ricinus communis]
16 Hb_180518_010 0.1484440399 - - PREDICTED: receptor-like protein 2 [Jatropha curcas]
17 Hb_004449_100 0.1508883487 - - -
18 Hb_036790_050 0.1520431259 - - PREDICTED: peroxidase 12-like [Jatropha curcas]
19 Hb_005841_070 0.1528792201 - - conserved hypothetical protein [Ricinus communis]
20 Hb_092655_010 0.1554334727 - - PREDICTED: uncharacterized protein LOC105650151 [Jatropha curcas]

Gene co-expression network

sample Hb_105885_010 Hb_105885_010 Hb_002073_160 Hb_002073_160 Hb_105885_010--Hb_002073_160 Hb_001174_040 Hb_001174_040 Hb_105885_010--Hb_001174_040 Hb_188281_020 Hb_188281_020 Hb_105885_010--Hb_188281_020 Hb_001210_120 Hb_001210_120 Hb_105885_010--Hb_001210_120 Hb_002031_020 Hb_002031_020 Hb_105885_010--Hb_002031_020 Hb_025557_080 Hb_025557_080 Hb_105885_010--Hb_025557_080 Hb_002073_160--Hb_001174_040 Hb_002073_160--Hb_001210_120 Hb_000617_070 Hb_000617_070 Hb_002073_160--Hb_000617_070 Hb_133926_010 Hb_133926_010 Hb_002073_160--Hb_133926_010 Hb_002073_160--Hb_188281_020 Hb_001174_040--Hb_000617_070 Hb_005841_070 Hb_005841_070 Hb_001174_040--Hb_005841_070 Hb_000480_020 Hb_000480_020 Hb_001174_040--Hb_000480_020 Hb_009620_080 Hb_009620_080 Hb_001174_040--Hb_009620_080 Hb_188281_020--Hb_002031_020 Hb_003788_030 Hb_003788_030 Hb_188281_020--Hb_003788_030 Hb_000581_010 Hb_000581_010 Hb_188281_020--Hb_000581_010 Hb_188281_020--Hb_025557_080 Hb_025557_070 Hb_025557_070 Hb_188281_020--Hb_025557_070 Hb_000487_350 Hb_000487_350 Hb_188281_020--Hb_000487_350 Hb_007237_060 Hb_007237_060 Hb_001210_120--Hb_007237_060 Hb_000237_060 Hb_000237_060 Hb_001210_120--Hb_000237_060 Hb_000959_200 Hb_000959_200 Hb_001210_120--Hb_000959_200 Hb_000685_100 Hb_000685_100 Hb_001210_120--Hb_000685_100 Hb_002031_020--Hb_000581_010 Hb_002031_020--Hb_000487_350 Hb_180518_010 Hb_180518_010 Hb_002031_020--Hb_180518_010 Hb_027577_010 Hb_027577_010 Hb_002031_020--Hb_027577_010 Hb_000188_040 Hb_000188_040 Hb_002031_020--Hb_000188_040 Hb_025557_080--Hb_025557_070 Hb_025161_060 Hb_025161_060 Hb_025557_080--Hb_025161_060 Hb_000291_240 Hb_000291_240 Hb_025557_080--Hb_000291_240 Hb_025557_080--Hb_000188_040 Hb_025557_080--Hb_002031_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 1.3607 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.070421 0.285268

CAGE analysis