Hb_005841_070

Information

Type -
Description -
Location Contig5841: 69078-69290
Sequence    

Annotation

kegg
ID rcu:RCOM_0624000
description hypothetical protein
nr
ID XP_002529410.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9STU1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0624000 PE=4 SV=1
Gene Ontology
ID GO:0016747
description shikimate o-hydroxycinnamoyltransferase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005841_070 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000480_020 0.0430410138 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000155_130 0.0501147034 - - conserved hypothetical protein [Ricinus communis]
4 Hb_009620_080 0.0776983273 - - hypothetical protein POPTR_0007s08150g [Populus trichocarpa]
5 Hb_002757_040 0.0818393222 - - -
6 Hb_000028_090 0.083794927 - - PREDICTED: uncharacterized protein LOC105135810 [Populus euphratica]
7 Hb_001174_040 0.0846735605 - - -
8 Hb_027472_250 0.0877670604 - - hypothetical protein POPTR_0007s08150g [Populus trichocarpa]
9 Hb_009164_010 0.0995486776 - - PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic-like [Jatropha curcas]
10 Hb_010327_060 0.1058573078 - - hypothetical protein B456_001G246300 [Gossypium raimondii]
11 Hb_000521_030 0.1074424291 - - PREDICTED: uncharacterized protein LOC105650350 [Jatropha curcas]
12 Hb_092655_010 0.1091038301 - - PREDICTED: uncharacterized protein LOC105650151 [Jatropha curcas]
13 Hb_009767_040 0.1129753872 - - PREDICTED: uncharacterized protein LOC105127022 [Populus euphratica]
14 Hb_002757_030 0.113580396 - - unnamed protein product [Vitis vinifera]
15 Hb_000485_050 0.1152065213 - - PREDICTED: alpha-dioxygenase 1 [Jatropha curcas]
16 Hb_000617_070 0.1152193781 - - hypothetical protein POPTR_0005s02420g [Populus trichocarpa]
17 Hb_000868_020 0.1218245962 - - -
18 Hb_004030_040 0.1283897334 - - PREDICTED: protein NRT1/ PTR FAMILY 2.8 [Jatropha curcas]
19 Hb_000594_010 0.1307068395 - - PREDICTED: lysine histidine transporter-like 6 isoform X3 [Populus euphratica]
20 Hb_003925_010 0.1335136394 - - Polygalacturonase precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_005841_070 Hb_005841_070 Hb_000480_020 Hb_000480_020 Hb_005841_070--Hb_000480_020 Hb_000155_130 Hb_000155_130 Hb_005841_070--Hb_000155_130 Hb_009620_080 Hb_009620_080 Hb_005841_070--Hb_009620_080 Hb_002757_040 Hb_002757_040 Hb_005841_070--Hb_002757_040 Hb_000028_090 Hb_000028_090 Hb_005841_070--Hb_000028_090 Hb_001174_040 Hb_001174_040 Hb_005841_070--Hb_001174_040 Hb_000480_020--Hb_000155_130 Hb_092655_010 Hb_092655_010 Hb_000480_020--Hb_092655_010 Hb_009164_010 Hb_009164_010 Hb_000480_020--Hb_009164_010 Hb_000480_020--Hb_002757_040 Hb_000594_010 Hb_000594_010 Hb_000480_020--Hb_000594_010 Hb_000155_130--Hb_092655_010 Hb_000155_130--Hb_009164_010 Hb_000155_130--Hb_002757_040 Hb_000155_130--Hb_000594_010 Hb_027472_250 Hb_027472_250 Hb_009620_080--Hb_027472_250 Hb_009620_080--Hb_000028_090 Hb_000485_050 Hb_000485_050 Hb_009620_080--Hb_000485_050 Hb_009620_080--Hb_002757_040 Hb_010327_060 Hb_010327_060 Hb_009620_080--Hb_010327_060 Hb_003925_010 Hb_003925_010 Hb_009620_080--Hb_003925_010 Hb_002757_040--Hb_010327_060 Hb_002757_040--Hb_000028_090 Hb_002757_030 Hb_002757_030 Hb_002757_040--Hb_002757_030 Hb_002757_040--Hb_009164_010 Hb_000868_020 Hb_000868_020 Hb_002757_040--Hb_000868_020 Hb_000028_090--Hb_027472_250 Hb_000028_090--Hb_000485_050 Hb_000028_090--Hb_010327_060 Hb_000028_090--Hb_000868_020 Hb_000617_070 Hb_000617_070 Hb_001174_040--Hb_000617_070 Hb_002073_160 Hb_002073_160 Hb_001174_040--Hb_002073_160 Hb_105885_010 Hb_105885_010 Hb_001174_040--Hb_105885_010 Hb_001174_040--Hb_000480_020 Hb_001174_040--Hb_009620_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 7.05853 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 1.05741

CAGE analysis