Hb_000014_200

Information

Type -
Description -
Location Contig14: 378597-381080
Sequence    

Annotation

kegg
ID tcc:TCM_004012
description hypothetical protein
nr
ID XP_012453334.1
description PREDICTED: uncharacterized protein LOC105775355 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A061DWP1
description Uncharacterized protein OS=Theobroma cacao GN=TCM_004012 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000014_200 0.0 - - PREDICTED: uncharacterized protein LOC105775355 [Gossypium raimondii]
2 Hb_169960_010 0.0755916097 - - -
3 Hb_001144_030 0.0777378534 - - hypothetical protein CICLE_v10023280mg, partial [Citrus clementina]
4 Hb_005207_040 0.1217951409 - - PREDICTED: zinc finger Ran-binding domain-containing protein 2-like [Cicer arietinum]
5 Hb_002559_020 0.130683762 transcription factor TF Family: TUB -
6 Hb_000300_650 0.1574134952 - - PREDICTED: arabinogalactan peptide 13-like [Jatropha curcas]
7 Hb_060783_010 0.1583870617 - - Chloride channel protein CLC-c [Populus trichocarpa]
8 Hb_003688_120 0.1603090858 - - PREDICTED: uncharacterized protein LOC105350793 [Fragaria vesca subsp. vesca]
9 Hb_002157_060 0.1613861592 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 9 [Jatropha curcas]
10 Hb_000685_100 0.1667245479 - - hypothetical protein POPTR_0001s10630g [Populus trichocarpa]
11 Hb_159809_080 0.1713872587 - - multidrug resistance pump, putative [Ricinus communis]
12 Hb_036790_050 0.1748065175 - - PREDICTED: peroxidase 12-like [Jatropha curcas]
13 Hb_002042_040 0.175784544 - - hypothetical protein POPTR_0013s02440g [Populus trichocarpa]
14 Hb_012077_010 0.1762088923 desease resistance Gene Name: NB-ARC Disease resistance protein RGA2, putative [Ricinus communis]
15 Hb_014102_010 0.1816935509 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
16 Hb_000034_060 0.1921013174 - - PREDICTED: O-acyltransferase WSD1-like [Citrus sinensis]
17 Hb_002808_010 0.1940430414 - - cinnamoyl-CoA reductase [Hevea brasiliensis]
18 Hb_005116_040 0.1952497997 - - PREDICTED: uncharacterized protein LOC105131445 [Populus euphratica]
19 Hb_179138_010 0.1991561337 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
20 Hb_003983_010 0.2009994401 - - serine/threonine-protein kinase bri1, putative [Ricinus communis]

Gene co-expression network

sample Hb_000014_200 Hb_000014_200 Hb_169960_010 Hb_169960_010 Hb_000014_200--Hb_169960_010 Hb_001144_030 Hb_001144_030 Hb_000014_200--Hb_001144_030 Hb_005207_040 Hb_005207_040 Hb_000014_200--Hb_005207_040 Hb_002559_020 Hb_002559_020 Hb_000014_200--Hb_002559_020 Hb_000300_650 Hb_000300_650 Hb_000014_200--Hb_000300_650 Hb_060783_010 Hb_060783_010 Hb_000014_200--Hb_060783_010 Hb_169960_010--Hb_005207_040 Hb_003688_120 Hb_003688_120 Hb_169960_010--Hb_003688_120 Hb_014102_010 Hb_014102_010 Hb_169960_010--Hb_014102_010 Hb_169960_010--Hb_001144_030 Hb_169960_010--Hb_002559_020 Hb_001144_030--Hb_002559_020 Hb_001144_030--Hb_060783_010 Hb_001144_030--Hb_005207_040 Hb_036790_050 Hb_036790_050 Hb_001144_030--Hb_036790_050 Hb_005207_040--Hb_002559_020 Hb_005207_040--Hb_003688_120 Hb_005207_040--Hb_014102_010 Hb_005207_040--Hb_060783_010 Hb_002559_020--Hb_060783_010 Hb_002559_020--Hb_036790_050 Hb_002559_020--Hb_003688_120 Hb_002559_020--Hb_014102_010 Hb_022973_010 Hb_022973_010 Hb_000300_650--Hb_022973_010 Hb_002370_020 Hb_002370_020 Hb_000300_650--Hb_002370_020 Hb_003371_280 Hb_003371_280 Hb_000300_650--Hb_003371_280 Hb_000300_650--Hb_169960_010 Hb_000034_060 Hb_000034_060 Hb_000300_650--Hb_000034_060 Hb_060783_010--Hb_036790_050 Hb_060783_010--Hb_003688_120 Hb_060783_010--Hb_014102_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.321978 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.115478 0.177039

CAGE analysis