Hb_003688_120

Information

Type -
Description -
Location Contig3688: 77017-77523
Sequence    

Annotation

kegg
ID pda:103724356
description uncharacterized LOC103724356
nr
ID XP_011462034.1
description PREDICTED: uncharacterized protein LOC105350793 [Fragaria vesca subsp. vesca]
swissprot
ID -
description -
trembl
ID A0A058ZWU4
description Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_L00350 PE=3 SV=1
Gene Ontology
ID GO:0005488
description geraniol 8-hydroxylase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37975: 62562-81888
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003688_120 0.0 - - PREDICTED: uncharacterized protein LOC105350793 [Fragaria vesca subsp. vesca]
2 Hb_014102_010 0.0220243294 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
3 Hb_005207_040 0.0645683177 - - PREDICTED: zinc finger Ran-binding domain-containing protein 2-like [Cicer arietinum]
4 Hb_000649_090 0.075260934 - - unnamed protein product [Vitis vinifera]
5 Hb_000806_010 0.0858670227 - - PREDICTED: hevamine-A-like [Jatropha curcas]
6 Hb_169960_010 0.0981508876 - - -
7 Hb_002559_020 0.1106174141 transcription factor TF Family: TUB -
8 Hb_012077_010 0.1260600915 desease resistance Gene Name: NB-ARC Disease resistance protein RGA2, putative [Ricinus communis]
9 Hb_060783_010 0.136785251 - - Chloride channel protein CLC-c [Populus trichocarpa]
10 Hb_051410_010 0.1394817612 - - PREDICTED: uncharacterized protein LOC103401813 [Malus domestica]
11 Hb_022973_010 0.1484625586 - - PREDICTED: trans-resveratrol di-O-methyltransferase-like [Jatropha curcas]
12 Hb_000914_010 0.149768459 - - hypothetical protein POPTR_0025s00760g [Populus trichocarpa]
13 Hb_006755_030 0.1516396758 - - BURP domain-containing protein, putative [Theobroma cacao]
14 Hb_000014_200 0.1603090858 - - PREDICTED: uncharacterized protein LOC105775355 [Gossypium raimondii]
15 Hb_001144_030 0.1617523089 - - hypothetical protein CICLE_v10023280mg, partial [Citrus clementina]
16 Hb_036790_050 0.1633058217 - - PREDICTED: peroxidase 12-like [Jatropha curcas]
17 Hb_011519_040 0.1733840297 - - hypothetical protein POPTR_0015s04770g [Populus trichocarpa]
18 Hb_000959_110 0.1765514123 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 13 [Vitis vinifera]
19 Hb_044380_010 0.178043146 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Malus domestica]
20 Hb_000946_130 0.1829142637 - - PREDICTED: uncharacterized protein LOC104602430 [Nelumbo nucifera]

Gene co-expression network

sample Hb_003688_120 Hb_003688_120 Hb_014102_010 Hb_014102_010 Hb_003688_120--Hb_014102_010 Hb_005207_040 Hb_005207_040 Hb_003688_120--Hb_005207_040 Hb_000649_090 Hb_000649_090 Hb_003688_120--Hb_000649_090 Hb_000806_010 Hb_000806_010 Hb_003688_120--Hb_000806_010 Hb_169960_010 Hb_169960_010 Hb_003688_120--Hb_169960_010 Hb_002559_020 Hb_002559_020 Hb_003688_120--Hb_002559_020 Hb_014102_010--Hb_000806_010 Hb_014102_010--Hb_000649_090 Hb_014102_010--Hb_005207_040 Hb_014102_010--Hb_169960_010 Hb_014102_010--Hb_002559_020 Hb_005207_040--Hb_002559_020 Hb_060783_010 Hb_060783_010 Hb_005207_040--Hb_060783_010 Hb_005207_040--Hb_169960_010 Hb_001144_030 Hb_001144_030 Hb_005207_040--Hb_001144_030 Hb_051410_010 Hb_051410_010 Hb_000649_090--Hb_051410_010 Hb_000914_010 Hb_000914_010 Hb_000649_090--Hb_000914_010 Hb_000649_090--Hb_000806_010 Hb_000649_090--Hb_169960_010 Hb_000806_010--Hb_005207_040 Hb_008714_030 Hb_008714_030 Hb_000806_010--Hb_008714_030 Hb_000806_010--Hb_051410_010 Hb_000014_200 Hb_000014_200 Hb_169960_010--Hb_000014_200 Hb_169960_010--Hb_001144_030 Hb_169960_010--Hb_002559_020 Hb_002559_020--Hb_060783_010 Hb_036790_050 Hb_036790_050 Hb_002559_020--Hb_036790_050 Hb_002559_020--Hb_001144_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.188449 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0427939 0.19328

CAGE analysis