Hb_008714_030

Information

Type -
Description -
Location Contig8714: 23275-23844
Sequence    

Annotation

kegg
ID tcc:TCM_004788
description Multidrug resistance protein ABC transporter family protein, putative
nr
ID XP_007051081.1
description Multidrug resistance protein ABC transporter family protein, putative [Theobroma cacao]
swissprot
ID -
description -
trembl
ID A0A061DZ20
description Multidrug resistance protein ABC transporter family protein, putative OS=Theobroma cacao GN=TCM_004788 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008714_030 0.0 - - Multidrug resistance protein ABC transporter family protein, putative [Theobroma cacao]
2 Hb_000343_090 0.0730009144 transcription factor TF Family: OFP conserved hypothetical protein [Ricinus communis]
3 Hb_000090_010 0.1202957998 - - hypothetical protein JCGZ_22567 [Jatropha curcas]
4 Hb_006351_090 0.121850256 - - UDP-glycosyltransferase 85A1 [Gossypium arboreum]
5 Hb_000997_370 0.1252101283 - - PREDICTED: 3-ketoacyl-CoA synthase 11-like [Jatropha curcas]
6 Hb_003906_080 0.1291734624 - - Peroxidase 66 precursor, putative [Ricinus communis]
7 Hb_010721_040 0.1303461894 transcription factor TF Family: M-type unnamed protein product [Vitis vinifera]
8 Hb_000806_010 0.1316248874 - - PREDICTED: hevamine-A-like [Jatropha curcas]
9 Hb_001097_030 0.1335085163 - - nuclear transport factor, putative [Ricinus communis]
10 Hb_000155_230 0.1345312061 - - rac gtpase, putative [Ricinus communis]
11 Hb_000563_520 0.1348806604 - - multidrug resistance pump, putative [Ricinus communis]
12 Hb_004994_230 0.1351111563 transcription factor TF Family: LIM Pollen-specific protein SF3, putative [Ricinus communis]
13 Hb_003038_070 0.1367356274 - - syntaxin, putative [Ricinus communis]
14 Hb_028818_020 0.1386680329 - - PREDICTED: glucomannan 4-beta-mannosyltransferase 9-like [Jatropha curcas]
15 Hb_002311_020 0.1399336242 - - PREDICTED: putative beta-D-xylosidase [Jatropha curcas]
16 Hb_101705_040 0.1405609084 - - cytochrome P450, putative [Ricinus communis]
17 Hb_011519_040 0.1405755196 - - hypothetical protein POPTR_0015s04770g [Populus trichocarpa]
18 Hb_002081_140 0.1411095169 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001105_150 0.142274179 - - GERMIN-LIKE protein 10 [Populus trichocarpa]
20 Hb_034507_030 0.1424532167 - - PREDICTED: laccase-4-like [Jatropha curcas]

Gene co-expression network

sample Hb_008714_030 Hb_008714_030 Hb_000343_090 Hb_000343_090 Hb_008714_030--Hb_000343_090 Hb_000090_010 Hb_000090_010 Hb_008714_030--Hb_000090_010 Hb_006351_090 Hb_006351_090 Hb_008714_030--Hb_006351_090 Hb_000997_370 Hb_000997_370 Hb_008714_030--Hb_000997_370 Hb_003906_080 Hb_003906_080 Hb_008714_030--Hb_003906_080 Hb_010721_040 Hb_010721_040 Hb_008714_030--Hb_010721_040 Hb_011501_020 Hb_011501_020 Hb_000343_090--Hb_011501_020 Hb_000343_090--Hb_010721_040 Hb_000343_090--Hb_000997_370 Hb_005539_150 Hb_005539_150 Hb_000343_090--Hb_005539_150 Hb_000654_020 Hb_000654_020 Hb_000343_090--Hb_000654_020 Hb_004994_230 Hb_004994_230 Hb_000090_010--Hb_004994_230 Hb_101705_040 Hb_101705_040 Hb_000090_010--Hb_101705_040 Hb_034507_030 Hb_034507_030 Hb_000090_010--Hb_034507_030 Hb_006483_020 Hb_006483_020 Hb_000090_010--Hb_006483_020 Hb_002311_020 Hb_002311_020 Hb_000090_010--Hb_002311_020 Hb_028818_020 Hb_028818_020 Hb_000090_010--Hb_028818_020 Hb_002170_030 Hb_002170_030 Hb_006351_090--Hb_002170_030 Hb_006351_090--Hb_003906_080 Hb_009158_040 Hb_009158_040 Hb_006351_090--Hb_009158_040 Hb_008705_080 Hb_008705_080 Hb_006351_090--Hb_008705_080 Hb_001053_120 Hb_001053_120 Hb_006351_090--Hb_001053_120 Hb_023342_010 Hb_023342_010 Hb_006351_090--Hb_023342_010 Hb_002081_140 Hb_002081_140 Hb_000997_370--Hb_002081_140 Hb_000254_080 Hb_000254_080 Hb_000997_370--Hb_000254_080 Hb_002119_150 Hb_002119_150 Hb_000997_370--Hb_002119_150 Hb_004837_080 Hb_004837_080 Hb_000997_370--Hb_004837_080 Hb_000538_110 Hb_000538_110 Hb_000997_370--Hb_000538_110 Hb_029386_010 Hb_029386_010 Hb_000997_370--Hb_029386_010 Hb_003906_080--Hb_002311_020 Hb_003906_080--Hb_002170_030 Hb_003906_080--Hb_004994_230 Hb_000805_060 Hb_000805_060 Hb_003906_080--Hb_000805_060 Hb_003906_080--Hb_023342_010 Hb_102761_010 Hb_102761_010 Hb_010721_040--Hb_102761_010 Hb_094484_010 Hb_094484_010 Hb_010721_040--Hb_094484_010 Hb_004530_010 Hb_004530_010 Hb_010721_040--Hb_004530_010 Hb_025161_030 Hb_025161_030 Hb_010721_040--Hb_025161_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0398743 0.514934 8.0125 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.775933 13.487

CAGE analysis