Hb_010721_040

Information

Type transcription factor
Description TF Family: M-type
Location Contig10721: 38116-41362
Sequence    

Annotation

kegg
ID sot:102603159
description agamous-like MADS-box protein AGL8-like
nr
ID CBI20107.3
description unnamed protein product [Vitis vinifera]
swissprot
ID Q38841
description Agamous-like MADS-box protein AGL12 OS=Arabidopsis thaliana GN=AGL12 PE=2 SV=2
trembl
ID E0CS08
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_19s0014g00310 PE=4 SV=1
Gene Ontology
ID GO:0003677
description agamous-like mads-box protein agl11

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02290: 40893-41073
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010721_040 0.0 transcription factor TF Family: M-type unnamed protein product [Vitis vinifera]
2 Hb_102761_010 0.1015244334 - - hypothetical protein JCGZ_21614 [Jatropha curcas]
3 Hb_094484_010 0.1041757747 - - kinase, putative [Ricinus communis]
4 Hb_004530_010 0.106211358 - - PREDICTED: uncharacterized protein LOC104898079 [Beta vulgaris subsp. vulgaris]
5 Hb_000343_090 0.1073422034 transcription factor TF Family: OFP conserved hypothetical protein [Ricinus communis]
6 Hb_025161_030 0.1274627467 - - PREDICTED: probable receptor-like protein kinase At1g67000 isoform X1 [Jatropha curcas]
7 Hb_008714_030 0.1303461894 - - Multidrug resistance protein ABC transporter family protein, putative [Theobroma cacao]
8 Hb_000914_010 0.1316435248 - - hypothetical protein POPTR_0025s00760g [Populus trichocarpa]
9 Hb_051410_010 0.134024375 - - PREDICTED: uncharacterized protein LOC103401813 [Malus domestica]
10 Hb_000997_370 0.1393951532 - - PREDICTED: 3-ketoacyl-CoA synthase 11-like [Jatropha curcas]
11 Hb_001248_140 0.1399216433 - - Thylakoid lumenal 19 kDa protein, chloroplast precursor, putative [Ricinus communis]
12 Hb_005622_040 0.1451758998 - - PREDICTED: inactive rhomboid protein 1 [Jatropha curcas]
13 Hb_011501_020 0.1465336296 - - PREDICTED: uncharacterized protein LOC105648929 [Jatropha curcas]
14 Hb_002081_140 0.1551480116 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000415_080 0.1590969771 - - -
16 Hb_000649_090 0.159192435 - - unnamed protein product [Vitis vinifera]
17 Hb_044380_010 0.1616203078 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Malus domestica]
18 Hb_004896_030 0.1636327663 - - hypothetical protein VITISV_007475 [Vitis vinifera]
19 Hb_000029_220 0.164874747 - - PREDICTED: pre-mRNA-splicing factor SLU7-A-like [Jatropha curcas]
20 Hb_004274_010 0.170529933 - - PREDICTED: uncharacterized protein LOC104451199 [Eucalyptus grandis]

Gene co-expression network

sample Hb_010721_040 Hb_010721_040 Hb_102761_010 Hb_102761_010 Hb_010721_040--Hb_102761_010 Hb_094484_010 Hb_094484_010 Hb_010721_040--Hb_094484_010 Hb_004530_010 Hb_004530_010 Hb_010721_040--Hb_004530_010 Hb_000343_090 Hb_000343_090 Hb_010721_040--Hb_000343_090 Hb_025161_030 Hb_025161_030 Hb_010721_040--Hb_025161_030 Hb_008714_030 Hb_008714_030 Hb_010721_040--Hb_008714_030 Hb_102761_010--Hb_004530_010 Hb_014510_030 Hb_014510_030 Hb_102761_010--Hb_014510_030 Hb_000415_080 Hb_000415_080 Hb_102761_010--Hb_000415_080 Hb_004896_030 Hb_004896_030 Hb_102761_010--Hb_004896_030 Hb_000627_110 Hb_000627_110 Hb_102761_010--Hb_000627_110 Hb_094484_010--Hb_102761_010 Hb_094484_010--Hb_025161_030 Hb_094484_010--Hb_000415_080 Hb_004274_010 Hb_004274_010 Hb_094484_010--Hb_004274_010 Hb_001452_150 Hb_001452_150 Hb_094484_010--Hb_001452_150 Hb_044380_010 Hb_044380_010 Hb_004530_010--Hb_044380_010 Hb_000997_370 Hb_000997_370 Hb_004530_010--Hb_000997_370 Hb_003714_030 Hb_003714_030 Hb_004530_010--Hb_003714_030 Hb_001248_140 Hb_001248_140 Hb_004530_010--Hb_001248_140 Hb_000343_090--Hb_008714_030 Hb_011501_020 Hb_011501_020 Hb_000343_090--Hb_011501_020 Hb_000343_090--Hb_000997_370 Hb_005539_150 Hb_005539_150 Hb_000343_090--Hb_005539_150 Hb_000654_020 Hb_000654_020 Hb_000343_090--Hb_000654_020 Hb_128750_010 Hb_128750_010 Hb_025161_030--Hb_128750_010 Hb_025161_030--Hb_102761_010 Hb_025161_030--Hb_004530_010 Hb_025161_030--Hb_000415_080 Hb_000090_010 Hb_000090_010 Hb_008714_030--Hb_000090_010 Hb_006351_090 Hb_006351_090 Hb_008714_030--Hb_006351_090 Hb_008714_030--Hb_000997_370 Hb_003906_080 Hb_003906_080 Hb_008714_030--Hb_003906_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.02141 0.17364 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0624189 0.414029

CAGE analysis